View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16633_high_10 (Length: 230)
Name: NF16633_high_10
Description: NF16633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16633_high_10 |
 | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 233381 - 233262
Alignment:
| Q |
2 |
gaaatgttgaacactcaagggtgcagactttggtgttccagttgactgagaaataattatctatcctagcagagaataatgaaagagctacagaagcaag |
101 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
233381 |
gaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaat---tatctatccttgcagagagtaatgaaagagctacagaagcaag |
233285 |
T |
|
| Q |
102 |
gttaggaagtggtcggttggatc |
124 |
Q |
| |
|
|||||| ||||| ||||||||| |
|
|
| T |
233284 |
gttaggcggtggtgggttggatc |
233262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 21629569 - 21629728
Alignment:
| Q |
2 |
gaaatgttgaacactcaagggtgcagactttggtgttccagttgactgagaaataattatctatcctagcagagaataatgaaagagctacagaagcaag |
101 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| |||| |||||||| ||||| |||||||||| ||| ||| |||||||||||||||| ||||||| |
|
|
| T |
21629569 |
gaaatgttgaacactcaagggtgcaggccttggcgttcgagttgact----aataaatatctatccttgcaaagagtaatgaaagagctacataagcaag |
21629664 |
T |
|
| Q |
102 |
gttaggaagtggtcggttggat--------cgctccttcaggtggaaagcatcaagacatgtcc |
157 |
Q |
| |
|
|| ||| || |||||||||| |||| |||||||||| | |||||||||||||||| |
|
|
| T |
21629665 |
gtcaggcgatgatcggttggattacaataccgctgcttcaggtggcatgcatcaagacatgtcc |
21629728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 7392114 - 7392233
Alignment:
| Q |
2 |
gaaatgttgaacactcaagggtgcagactttggtgttccagttgactgagaaataattatctatcctagcagagaataatgaaagagctacagaagcaag |
101 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
7392114 |
gaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaat---tatctatccttgcagagagtaatgaaagagctacagaagcaag |
7392210 |
T |
|
| Q |
102 |
gttaggaagtggtcggttggatc |
124 |
Q |
| |
|
|||||| | ||| ||||||||| |
|
|
| T |
7392211 |
gttaggcggcggtgggttggatc |
7392233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 48298497 - 48298378
Alignment:
| Q |
2 |
gaaatgttgaacactcaagggtgcagactttggtgttccagttgactgagaaataattatctatcctagcagagaataatgaaagagctacagaagcaag |
101 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| ||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
48298497 |
gaaatgttgaactctcaagggtgcaggctttggcattccagttgactgagaaat---tatctatccttgcagagagtaatgaaagagcttcagaagcaag |
48298401 |
T |
|
| Q |
102 |
gttaggaagtggtcggttggatc |
124 |
Q |
| |
|
||||| ||||| ||||||||| |
|
|
| T |
48298400 |
attaggtggtggtgggttggatc |
48298378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 16572801 - 16572994
Alignment:
| Q |
2 |
gaaatgttgaacactcaagggtgcagactttggtgttccagttgactgagaaataattatctatcctagcagagaataatgaaagagctacagaagcaag |
101 |
Q |
| |
|
|||||||||||| ||| | ||||||| |||||| |||| |||||||||||| ||||||| ||||| || ||| |||||||||||||||||||| | | |
|
|
| T |
16572801 |
gaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgaga---aattatccatccttgctaagagtaatgaaagagctacagaagtatg |
16572897 |
T |
|
| Q |
102 |
gttaggaagtggtcggttggat--------cgctccttcaggtggaaagcatcaagacatgtcc-cttctcaaaagcttagggaagtttgtgcttaac |
190 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||||||| | || | ||||||||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
16572898 |
attaggaagt-gtcagttggattgcactgccgctccttcaggtggcaggcgtgaagacatgtcctattctcaaaagcttgggggagtttgtgcttaac |
16572994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 16874683 - 16874800
Alignment:
| Q |
2 |
gaaatgttgaacactcaagggtgcagactttggtgttccagttgactgagaaataattatctatcctagcagagaataatgaaagagctacagaagcaag |
101 |
Q |
| |
|
|||||||||||| ||| | ||||||| |||||| |||| | ||||||||||||| |||| ||||| || ||| |||||||||||||||||||||| | |
|
|
| T |
16874683 |
gaaatgttgaactctctatggtgcaggctttggcgttcgaattgactgagaaat---tatccatccttgctaagagtaatgaaagagctacagaagcatg |
16874779 |
T |
|
| Q |
102 |
gttaggaagtggtcggttggat |
123 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
16874780 |
gttaggaagt-gtcggttggat |
16874800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 16580822 - 16580929
Alignment:
| Q |
2 |
gaaatgttgaacactcaagggtgcagactttggtgttccagttgactgagaaataattatctatcctagcagagaataatgaaagagctacagaagcaag |
101 |
Q |
| |
|
|||||||||||| ||| | ||||||| |||||| |||| ||||||| ||||||| |||| ||||| || ||| || ||||||||||||||||||| | |
|
|
| T |
16580822 |
gaaatgttgaaccctctatggtgcaggctttggcgttcgagttgaccgagaaat---tatccatccttgctaagagtagtgaaagagctacagaagcatg |
16580918 |
T |
|
| Q |
102 |
gttaggaagtg |
112 |
Q |
| |
|
||||||||||| |
|
|
| T |
16580919 |
gttaggaagtg |
16580929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 16614558 - 16614451
Alignment:
| Q |
2 |
gaaatgttgaacactcaagggtgcagactttggtgttccagttgactgagaaataattatctatcctagcagagaataatgaaagagctacagaagcaag |
101 |
Q |
| |
|
|||||||||||| ||| | ||||||| |||||| |||| ||||||| ||||||| |||| ||||| || ||| || ||||||||||||||||||| | |
|
|
| T |
16614558 |
gaaatgttgaaccctctatggtgcaggctttggcgttcgagttgaccgagaaat---tatccatccttgctaagagtagtgaaagagctacagaagcatg |
16614462 |
T |
|
| Q |
102 |
gttaggaagtg |
112 |
Q |
| |
|
||||||||||| |
|
|
| T |
16614461 |
gttaggaagtg |
16614451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 10907 - 10838
Alignment:
| Q |
3 |
aaatgttgaacactcaagggtgcagactttggtgttccagttgactgagaaataattatctatcctagcagag |
75 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
10907 |
aaatgttgaacactcaagggtgcaggctttgtcgttcaagttgactgaga---aattatctatccttgcagag |
10838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University