View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16633_high_3 (Length: 506)
Name: NF16633_high_3
Description: NF16633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16633_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 37497791 - 37498286
Alignment:
| Q |
1 |
tcaactaagattttcattgtggtttctgttgcgatcattgatattgtagagaattgctgtcaaatgtggctgataaggtctaattcgcagccagagatat |
100 |
Q |
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| T |
37497791 |
tcaactaagattttcattgtggtttctgttgcgatcattgatattgtagagaattgctgtcaaatgtggctgataaggtctaattcgcagccagagatat |
37497890 |
T |
|
| Q |
101 |
taaaaccttgatgttgtaacccaaattgcagtcgtgagtgggctagtggataggcattggtcattcaaataacattttcattgtttatttccaactacaa |
200 |
Q |
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| T |
37497891 |
taaaaccttgatgttgtaacccaaattgcagtcgtgagtgggctagtggataggcattggtcattcaaataacattttcattgtttatttccaactacaa |
37497990 |
T |
|
| Q |
201 |
tcatatctatgctactcttatgtacatgtaagctagacagtagaatatagttttttcattgttctgatcagtaagtaaacactaccctcgagtattcgtt |
300 |
Q |
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| T |
37497991 |
tcatatctatgctactcttatgtacatgtaaactagacagtagaatatagttttttcattgttctgatcagtaagtaaacactaccctcgagtattcgtt |
37498090 |
T |
|
| Q |
301 |
tgtgttattttaccccttttgtgttaactgtgttcttgaattttttgcaggcttaagttttactgaagctgagaggaggctgcgggaaaatggtccaaat |
400 |
Q |
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| T |
37498091 |
tgtgttattttcccccttttgtgttaactgtgttcttgaattttttgcaggcttaagttttactgaagctgagaggaggctgcgggaaaatggtccaaat |
37498190 |
T |
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| Q |
401 |
gttccacttgagtattcatttccaagctggtggaatcttctatggaatgctcttttccatcctttcaatatgattctgattattttatcttctctg |
496 |
Q |
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| T |
37498191 |
gttccacttgagtattcatttccaagcttgtggaatcttctatggaatgctcttttccatcctttcaatatgattctgattattttatcttctctg |
37498286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 32618778 - 32618729
Alignment:
| Q |
28 |
gttgcgatcattgatattgtagagaattgctgtcaaatgtggctgataag |
77 |
Q |
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|||||||| |||||||||||||| ||||| |||||||| |||||||||| |
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| T |
32618778 |
gttgcgatatttgatattgtagagtattgcagtcaaatgcggctgataag |
32618729 |
T |
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