View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16633_high_4 (Length: 359)

Name: NF16633_high_4
Description: NF16633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16633_high_4
NF16633_high_4
[»] chr4 (3 HSPs)
chr4 (197-309)||(53402496-53402608)
chr4 (201-254)||(43543272-43543325)
chr4 (127-315)||(5321858-5322043)
[»] chr5 (2 HSPs)
chr5 (9-91)||(40407051-40407134)
chr5 (215-291)||(34443309-34443387)
[»] chr3 (5 HSPs)
chr3 (197-289)||(5528349-5528441)
chr3 (201-306)||(25410388-25410492)
chr3 (219-268)||(27158319-27158368)
chr3 (218-252)||(35314118-35314152)
chr3 (197-310)||(10896108-10896221)
[»] chr2 (8 HSPs)
chr2 (117-291)||(17560787-17560959)
chr2 (117-277)||(40800161-40800318)
chr2 (218-291)||(41501067-41501140)
chr2 (232-310)||(13779107-13779185)
chr2 (215-308)||(36069304-36069398)
chr2 (197-254)||(31013610-31013667)
chr2 (128-242)||(32648159-32648269)
chr2 (128-176)||(37171734-37171782)
[»] scaffold0606 (1 HSPs)
scaffold0606 (139-296)||(1911-2063)
[»] chr1 (3 HSPs)
chr1 (201-291)||(39003178-39003268)
chr1 (117-248)||(5696724-5696852)
chr1 (201-261)||(1485431-1485491)
[»] chr6 (2 HSPs)
chr6 (120-261)||(33189516-33189665)
chr6 (190-291)||(11714196-11714297)
[»] chr7 (2 HSPs)
chr7 (117-261)||(26562971-26563112)
chr7 (203-268)||(12163666-12163731)
[»] chr8 (1 HSPs)
chr8 (128-249)||(30678351-30678474)


Alignment Details
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 309
Target Start/End: Complemental strand, 53402608 - 53402496
Alignment:
Q  197 ctcctatataaggatgattctgcgtcaccttcaaggtacgattcatttcccacacactttcacactttcaacatcacttcttgcactgacttgagaatta 296  Q
    ||||||||||||| |||||  |||||||| |||||||||||||||||||||||||||||| |||| |||| | ||| ||| ||||| ||||||||  ||     
T  53402608 ctcctatataagggtgatttcgcgtcaccctcaaggtacgattcatttcccacacacttttacacattcatcctcatttcctgcaccgacttgagcgttg 53402509  T
Q  297 aagtgctaacgtg 309  Q
    || ||||||||||    
T  53402508 aaatgctaacgtg 53402496  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 43543272 - 43543325
Alignment:
Q  201 tatataaggatgattctgcgtcaccttcaaggtacgattcatttcccacacact 254  Q
    ||||||||||||| | ||||||||| ||||| ||| ||||||||||||||||||    
T  43543272 tatataaggatgactttgcgtcaccctcaagatacaattcatttcccacacact 43543325  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 315
Target Start/End: Original strand, 5321858 - 5322043
Alignment:
Q  127 gtacacgtggcctccaacggttccctgatgaggtgccacaatttacggaattcgttagcacatccttctcctcctatataaggatgattctgcgtcacct 226  Q
    ||||||||||||||||||  ||||||||||||| |||||| || || ||| |||||||    |||||   || |||||||| | ||||||   |||||||    
T  5321858 gtacacgtggcctccaactattccctgatgaggcgccacatttcacagaagtcgttagtgtctcctt---cttctatataaaggtgattcaatgtcacct 5321954  T
Q  227 tcaaggtacgattcatttcccacacactttcacactttcaacatcacttcttgcactgacttgagaattaaagtgctaacgtgcttgta 315  Q
    ||||  ||||||||||||  ||| || | | |||| |||||| ||| ||| | |||||||||||  ||| | |||||||| ||| ||||    
T  5321955 tcaaactacgattcatttttcacgcattgttacacattcaacctcatttcctacactgacttgaacattgatgtgctaacatgcctgta 5322043  T

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Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 40407134 - 40407051
Alignment:
Q  9 ttatcttattttaaatcttatatattgttctgga-agctagaaagtcaatcccatgaagacacgtagaccctgaacgaggcatt 91  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| |||  |||||| ||||||||||||||| ||||||||    
T  40407134 ttatcttattttaaatcttatatattgttctggaccgctagaaagtccatcatatgaaggcacgtagaccctgaatgaggcatt 40407051  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 34443387 - 34443309
Alignment:
Q  215 tctgcgtcaccttcaaggtacgatt-cattt-cccacacactttcacactttcaacatcacttcttgcactgacttgag 291  Q
    ||||||||||| ||||||||| ||| ||||| |||||||||||| |||| |||||| ||| ||| | ||||||||||||    
T  34443387 tctgcgtcaccctcaaggtacaatttcattttcccacacacttttacacattcaacttcatttcctacactgacttgag 34443309  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 197 - 289
Target Start/End: Original strand, 5528349 - 5528441
Alignment:
Q  197 ctcctatataaggatgattctgcgtcaccttcaaggtacgattcatttcccacacactttcacactttcaacatcacttcttgcactgacttg 289  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||||||| |||| |||||| ||| ||| | | ||||||||    
T  5528349 ctcctatataagggtgattctgcgtcaccctcaaggtacgatttatttctcacacacttttacacattcaacctcatttcctactctgacttg 5528441  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 306
Target Start/End: Original strand, 25410388 - 25410492
Alignment:
Q  201 tatataaggatgattctgcgtcaccttcaaggtacgattcatttcccacacactttcacactttcaacatcacttcttgcactgacttgagaattaaagt 300  Q
    ||||||||||||||||  ||||||| || || |||||||||||||||||| | ||| |||| |||||  ||| ||| | |||||||||||| |||| |||    
T  25410388 tatataaggatgattccacgtcaccctccagatacgattcatttcccacata-ttttacacattcaatctcatttcctacactgacttgagcattagagt 25410486  T
Q  301 gctaac 306  Q
    ||||||    
T  25410487 gctaac 25410492  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 27158368 - 27158319
Alignment:
Q  219 cgtcaccttcaaggtacgattcatttcccacacactttcacactttcaac 268  Q
    ||||||| ||||||||| |||||||||||||||||||| |||| ||||||    
T  27158368 cgtcaccctcaaggtacaattcatttcccacacacttttacacattcaac 27158319  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 252
Target Start/End: Original strand, 35314118 - 35314152
Alignment:
Q  218 gcgtcaccttcaaggtacgattcatttcccacaca 252  Q
    |||||||| ||||||||||||||||||||||||||    
T  35314118 gcgtcaccctcaaggtacgattcatttcccacaca 35314152  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 310
Target Start/End: Complemental strand, 10896221 - 10896108
Alignment:
Q  197 ctcctatataaggatgattctgcgtcaccttcaaggtacgattcatttcccacacactttcacactttcaacatcacttcttgcactgacttgagaatta 296  Q
    |||||| |||||| | |||||||||| || |||||||||||||||||| |  ||||| || |||||||| || ||| ||  | |||| |||||||  ||     
T  10896221 ctcctacataagggttattctgcgtcgccctcaaggtacgattcattttctgcacaccttaacactttcgacctcatttactacactaacttgagcgttg 10896122  T
Q  297 aagtgctaacgtgc 310  Q
     |||||||||||||    
T  10896121 gagtgctaacgtgc 10896108  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 291
Target Start/End: Complemental strand, 17560959 - 17560787
Alignment:
Q  117 ttcctgcgtcgtacacgtggcctccaacggttccctgatgaggtgccacaatttacggaattcgttagcacatccttctcctcctatataaggatgattc 216  Q
    |||||||  ||||||| ||||||||||||| || |||||||||  || |  || | |||||| |||||| | |||||   ||||||||||||| ||||||    
T  17560959 ttcctgcaccgtacacatggcctccaacggctctctgatgaggctccgcgtttcatggaatttgttagcgcctcctt---ctcctatataagggtgattc 17560863  T
Q  217 tgcgtcaccttcaaggtacgattca-tttcccacacactttcacactttcaacatcacttcttgcactgacttgag 291  Q
    ||||||||| ||||||||| ||||| ||| ||||||| | | |||| |||||| ||| ||| | ||||||||||||    
T  17560862 tgcgtcaccctcaaggtacaattcatttttccacacattcttacacattcaacctcatttcctacactgacttgag 17560787  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 40800318 - 40800161
Alignment:
Q  117 ttcctgcgtcgtacacgtggcctccaacggttccctgatgaggtgccacaatttacggaattcgttagcacatccttctcctcctatataaggatgattc 216  Q
    |||||||  |||||| ||||| |||||||  || ||||| ||   ||||| || |||||| |||||||||  ||||||||||   |||||||| |||||     
T  40800318 ttcctgcaccgtacatgtggcttccaacgactcactgataagacaccacatttcacggaagtcgttagcatctccttctcct---atataagggtgattt 40800222  T
Q  217 tgcgtcaccttcaaggtacgattcatttcccacacactttcacactttcaacatcacttct 277  Q
     |||||||| ||||||||||||||||||||  |||||||| ||||  ||||||||| ||||    
T  40800221 cgcgtcaccctcaaggtacgattcatttcctccacacttttacacaatcaacatcatttct 40800161  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 41501067 - 41501140
Alignment:
Q  218 gcgtcaccttcaaggtacgattcatttcccacacactttcacactttcaacatcacttcttgcactgacttgag 291  Q
    |||||||| |||||||||||||||||||||||||  ||| |||| || ||| ||| ||| | ||||||||||||    
T  41501067 gcgtcaccctcaaggtacgattcatttcccacacttttttacacattaaacctcatttcctacactgacttgag 41501140  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 13779107 - 13779185
Alignment:
Q  232 gtacgattcatttcccacacactttcacactttcaacatcacttcttgcactgacttgagaattaaagtgctaacgtgc 310  Q
    |||| |||||||||||||| ||||| |||| |||||| ||| ||||| |||| |||||||  ||| | |||||||||||    
T  13779107 gtacaattcatttcccacaaacttttacacattcaacctcatttcttacactaacttgagcgttagactgctaacgtgc 13779185  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 308
Target Start/End: Complemental strand, 36069398 - 36069304
Alignment:
Q  215 tctgcgtcaccttcaaggtacgattcatttcccacacactt-tcacactttcaacatcacttcttgcactgacttgagaattaaagtgctaacgt 308  Q
    ||||||||||| ||||||||| |||||||||||| ||| || | |||| |||||| ||| ||| | |||  ||||||| |||| |||||||||||    
T  36069398 tctgcgtcaccctcaaggtacaattcatttcccaaacatttcttacacattcaacctcatttcctccacaaacttgagcattagagtgctaacgt 36069304  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 31013667 - 31013610
Alignment:
Q  197 ctcctatataaggatgattctgcgtcaccttcaaggtacgattcatttcccacacact 254  Q
    ||||||||||| | ||||||  ||||||  |||||||||||||||||| |||||||||    
T  31013667 ctcctatataaaggtgattccacgtcacagtcaaggtacgattcattttccacacact 31013610  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 32648269 - 32648159
Alignment:
Q  128 tacacgtggcctccaacggttccctgatgaggtgccacaatttacggaattcgttagcacatccttctcctcctatataaggatgattctgcgtcacctt 227  Q
    |||| |||||||||||| | | ||||||||||  ||| | || ||||||  ||||||||||||||||||||   |||||| | ||| ||  |||||||||    
T  32648269 tacatgtggcctccaacagcttcctgatgaggcacca-atttcacggaagccgttagcacatccttctcct---atataaaggtgactcaacgtcacctt 32648174  T
Q  228 caaggtacgattcat 242  Q
    |||||||| ||||||    
T  32648173 caaggtacaattcat 32648159  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 37171782 - 37171734
Alignment:
Q  128 tacacgtggcctccaacggttccctgatgaggtgccacaatttacggaa 176  Q
    ||||||| ||||||||||| |||||||| ||| |||||| |||||||||    
T  37171782 tacacgtagcctccaacggctccctgataaggcgccacattttacggaa 37171734  T

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Target: scaffold0606 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 296
Target Start/End: Original strand, 1911 - 2063
Alignment:
Q  139 tccaacggttccctgatgaggtgccacaatttacggaattcgttagcacatccttctcctcctatataaggatgattctgcgtcaccttcaaggtacgat 238  Q
    |||||||| || ||||||||| |||||| |||||| |||| |||||   ||| |    ||||||||||||| ||||||||| ||||| ||||||||||||    
T  1911 tccaacggatctctgatgaggcgccacattttacgaaatttgttagtgtatctt----ctcctatataagggtgattctgcatcaccctcaaggtacgat 2006  T
Q  239 tcatttcccacacactttcacactttcaacatcacttcttgcactgacttgagaatta 296  Q
    |||||| ||||||||||| || ||| |||| ||| ||| | |||||| ||||| ||||    
T  2007 tcattt-ccacacacttttactcttccaacgtcatttcctacactgatttgagcatta 2063  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 291
Target Start/End: Complemental strand, 39003268 - 39003178
Alignment:
Q  201 tatataaggatgattctgcgtcaccttcaaggtacgattcatttcccacacactttcacactttcaacatcacttcttgcactgacttgag 291  Q
    ||||||||| |||||| || ||||| ||||||||||||| |||||||||||||||| |||| |||||| ||| ||| | |||||| |||||    
T  39003268 tatataagggtgattccgcatcaccctcaaggtacgattaatttcccacacacttttacacattcaacttcatttcctacactgatttgag 39003178  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 117 - 248
Target Start/End: Original strand, 5696724 - 5696852
Alignment:
Q  117 ttcctgcgtcgtacacgtggcctccaacggttccctgatgaggtgccacaatttacggaattcgttagcacatccttctcctcctatataaggatgattc 216  Q
    ||||||| |||| || |||||||||||||| || | ||||||| ||| || || ||  |||| ||||||    ||| |||| |||||||||||  |||||    
T  5696724 ttcctgcatcgttcatgtggcctccaacggctctcggatgaggcgccgcatttcacataatttgttagc---gcctcctccccctatataagggcgattc 5696820  T
Q  217 tgcgtcaccttcaaggtacgattcatttccca 248  Q
    ||||||||| ||||||||||||||||||||||    
T  5696821 tgcgtcaccctcaaggtacgattcatttccca 5696852  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 1485491 - 1485431
Alignment:
Q  201 tatataaggatgattctgcgtcaccttcaaggtacgattcatttcccacacactttcacac 261  Q
    |||||||||||||||| |||||||| |||||||| |||||||||||| |||| ||| ||||    
T  1485491 tatataaggatgattccgcgtcaccctcaaggtatgattcatttccctcacatttttacac 1485431  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 261
Target Start/End: Complemental strand, 33189665 - 33189516
Alignment:
Q  120 ctgcgtcgtacacgtggcctccaacggttccctgatgaggtgccacaatttacggaattcgttagcacatccttctcctc--------ctatataaggat 211  Q
    |||| |||||||||||||||||||||| | |||||||||| ||  || || ||||||   |||||| | ||||||||||         ||||||||||      
T  33189665 ctgcatcgtacacgtggcctccaacggctgcctgatgaggcgctgcatttcacggaagcagttagcgcctccttctcctatgtaagggctatataaggga 33189566  T
Q  212 gattctgcgtcaccttcaaggtacgattcatttcccacacactttcacac 261  Q
    || || |||||||| |||||||||||||||||||||||||||||| ||||    
T  33189565 gactcagcgtcaccatcaaggtacgattcatttcccacacacttttacac 33189516  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 291
Target Start/End: Complemental strand, 11714297 - 11714196
Alignment:
Q  190 ccttctcctcctatataaggatgattctgcgtcaccttcaaggtacgattcatttcccacacactttcacactttcaacatcacttcttgcactgacttg 289  Q
    |||||| ||||||||||||| ||| ||  ||||||| ||||||||| |||||||||||| ||| ||| |||| |||||| ||| ||| | ||| ||||||    
T  11714297 ccttcttctcctatataagggtgactccacgtcaccctcaaggtacaattcatttcccatacatttttacacattcaacctcatttcctacacagacttg 11714198  T
Q  290 ag 291  Q
    ||    
T  11714197 ag 11714196  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 261
Target Start/End: Complemental strand, 26563112 - 26562971
Alignment:
Q  117 ttcctgcgtcgtacacgtggcctccaacggttccctgatgaggtgccacaatttacggaattcgttagcacatccttctcctcctatataaggatgattc 216  Q
    ||||||| || |||| |||||||||||| | |||||||||||||||  || || || ||| |||||||| | || || ||||   || ||||  |||||     
T  26563112 ttcctgcatcatacatgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagcgcctctttatcct---atctaagagtgattt 26563016  T
Q  217 tgcgtcaccttcaaggtacgattcatttcccacacactttcacac 261  Q
     |||||||||||||||||||||| |||||| ||||||||| ||||    
T  26563015 cgcgtcaccttcaaggtacgatttatttcctacacacttttacac 26562971  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 12163666 - 12163731
Alignment:
Q  203 tataaggatgattctgcgtcaccttcaaggtacgattcatttcccacacactttcacactttcaac 268  Q
    |||||||  ||||| |||||||| ||||| |||||||||||||||||| | ||| |||| ||||||    
T  12163666 tataagggcgattccgcgtcaccctcaagttacgattcatttcccacataattttacacattcaac 12163731  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 30678351 - 30678474
Alignment:
Q  128 tacacgtggcctccaacggttccctgatgaggtgccacaatttacggaattcgttagcacatccttctcctcc--tatataaggatgattctgcgtcacc 225  Q
    ||||||||||||||||||| | |||||||| | ||| || || |||||| ||||| |  | ||||||| ||||  ||||||||| |||||| || |||||    
T  30678351 tacacgtggcctccaacggctgcctgatgatgcgccgcacttcacggaagtcgttggtgcctccttcttctcctatatataagggtgattccgcatcacc 30678450  T
Q  226 ttcaaggtacgattcatttcccac 249  Q
     ||||||||  |||||||| ||||    
T  30678451 ctcaaggtagaattcattttccac 30678474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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