View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16633_low_14 (Length: 226)

Name: NF16633_low_14
Description: NF16633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16633_low_14
NF16633_low_14
[»] chr5 (3 HSPs)
chr5 (10-209)||(17182246-17182442)
chr5 (136-181)||(31742567-31742612)
chr5 (138-184)||(27713473-27713519)
[»] chr3 (4 HSPs)
chr3 (137-191)||(31424660-31424714)
chr3 (137-179)||(4637031-4637073)
chr3 (137-195)||(24713056-24713113)
chr3 (155-183)||(46358034-46358062)
[»] scaffold0050 (1 HSPs)
scaffold0050 (137-181)||(37110-37155)
[»] chr4 (3 HSPs)
chr4 (136-181)||(47105171-47105216)
chr4 (137-175)||(35851376-35851414)
chr4 (141-181)||(21983512-21983552)
[»] chr8 (1 HSPs)
chr8 (126-185)||(3679831-3679889)
[»] chr7 (3 HSPs)
chr7 (126-188)||(5252713-5252776)
chr7 (137-181)||(43344481-43344525)
chr7 (141-181)||(47456711-47456751)
[»] chr1 (2 HSPs)
chr1 (130-195)||(9081093-9081157)
chr1 (137-185)||(9613011-9613059)
[»] chr6 (1 HSPs)
chr6 (141-181)||(6944743-6944783)
[»] chr2 (1 HSPs)
chr2 (141-181)||(29487503-29487543)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 17182442 - 17182246
Alignment:
Q  10 catcatcaaccatcttcactgaactcaattctacctcaagattatcatggtatgcatattctctctaacctatgttgcatcaacacatcatattaaaaac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17182442 catcatcaaccatcttcactgaactcaattctacctcaagattatcatggtatgcatattctctctaacctatgttgcatcaacacatcatattaaaaac 17182343  T
Q  110 atttccagnnnnnnnattttgaacggaaaaatttattaaaaacatgatccctgctcaagacgaacagagaccagtatcagagattaaaaacatttccaat 209  Q
    ||||||||        |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17182342 atttccagttttt---tttttaacggaaaaatttattaaaaacatgatccctgctcaaggcgaacagagaccagtatcagagattaaaaacatttccaat 17182246  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 31742612 - 31742567
Alignment:
Q  136 aaaaatttattaaaaacatgatccctgctcaagacgaacagagacc 181  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||    
T  31742612 aaaattttattaaaaacctgatccctgcacaagacgaacagagacc 31742567  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 27713519 - 27713473
Alignment:
Q  138 aaatttattaaaaacatgatccctgctcaagacgaacagagaccagt 184  Q
    |||||||||||||||  |||||||| ||||||||||| |||||||||    
T  27713519 aaatttattaaaaaccagatccctgttcaagacgaactgagaccagt 27713473  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 31424714 - 31424660
Alignment:
Q  137 aaaatttattaaaaacatgatccctgctcaagacgaacagagaccagtatcagag 191  Q
    ||||| |||||||||| ||||||||| |||||||||||| |||||||||||||||    
T  31424714 aaaatatattaaaaacttgatccctgttcaagacgaacaaagaccagtatcagag 31424660  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 4637031 - 4637073
Alignment:
Q  137 aaaatttattaaaaacatgatccctgctcaagacgaacagaga 179  Q
    |||||||||| |||||||||||||||||||| | |||||||||    
T  4637031 aaaatttatttaaaacatgatccctgctcaaaatgaacagaga 4637073  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 24713113 - 24713056
Alignment:
Q  137 aaaatttattaaaaacatgatccctgctcaagacgaacagagaccagtatcagagatta 195  Q
    |||||||||| ||||| || ||| ||||||||| |||||||||||||||| ||||||||    
T  24713113 aaaatttatttaaaacttggtcc-tgctcaagatgaacagagaccagtataagagatta 24713056  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 46358034 - 46358062
Alignment:
Q  155 gatccctgctcaagacgaacagagaccag 183  Q
    |||||||||||||||||||||||||||||    
T  46358034 gatccctgctcaagacgaacagagaccag 46358062  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 37155 - 37110
Alignment:
Q  137 aaaatttattaaa-aacatgatccctgctcaagacgaacagagacc 181  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  37155 aaaatttattaaacaacctgatccctgctcaagacgaacagagacc 37110  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 47105171 - 47105216
Alignment:
Q  136 aaaaatttattaaaaacatgatccctgctcaagacgaacagagacc 181  Q
    ||||||||||||||||  |||||||||| |||||||||||||||||    
T  47105171 aaaaatttattaaaaatctgatccctgcacaagacgaacagagacc 47105216  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 35851414 - 35851376
Alignment:
Q  137 aaaatttattaaaaacatgatccctgctcaagacgaaca 175  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  35851414 aaaatttattaaaaacctgatccctgcacaagacgaaca 35851376  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 21983512 - 21983552
Alignment:
Q  141 tttattaaaaacatgatccctgctcaagacgaacagagacc 181  Q
    |||||||||||   |||||||||||||||||||||||||||    
T  21983512 tttattaaaaatcagatccctgctcaagacgaacagagacc 21983552  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 3679889 - 3679831
Alignment:
Q  126 ttttgaacggaaaaatttattaaaaacatgatccctgctcaagacgaacagagaccagta 185  Q
    |||| ||||| |||||||||||||||| |||||| ||||||||| ||| |||||||||||    
T  3679889 tttttaacggcaaaatttattaaaaacctgatccttgctcaagaagaa-agagaccagta 3679831  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 5252776 - 5252713
Alignment:
Q  126 ttttgaacggaaaaatttattaaaaacat-gatccctgctcaagacgaacagagaccagtatca 188  Q
    |||| ||||| |||||||||||||||  | ||||||| |||||||||||||||||||| |||||    
T  5252776 tttttaacggtaaaatttattaaaaaatttgatccctactcaagacgaacagagaccactatca 5252713  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 43344481 - 43344525
Alignment:
Q  137 aaaatttattaaaaacatgatccctgctcaagacgaacagagacc 181  Q
    |||||||||| |||||  ||||||||||||||||||| |||||||    
T  43344481 aaaatttatttaaaactcgatccctgctcaagacgaatagagacc 43344525  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 47456711 - 47456751
Alignment:
Q  141 tttattaaaaacatgatccctgctcaagacgaacagagacc 181  Q
    ||||||||||||  |||| ||||||||||||||||||||||    
T  47456711 tttattaaaaaccagatctctgctcaagacgaacagagacc 47456751  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 9081093 - 9081157
Alignment:
Q  130 gaacggaaaaatttattaaaaacatgatccctgctcaagacgaacagagaccagtatcagagatta 195  Q
    |||||||||| |||||||||| | |||||||||||||||| ||||| | |||| |||| |||||||    
T  9081093 gaacggaaaattttattaaaa-cttgatccctgctcaagatgaacatataccaatatccgagatta 9081157  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 9613011 - 9613059
Alignment:
Q  137 aaaatttattaaaaacatgatccctgctcaagacgaacagagaccagta 185  Q
    |||||||||||||||| |||||| || | |||||||||| |||||||||    
T  9613011 aaaatttattaaaaacttgatccatgtttaagacgaacaaagaccagta 9613059  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 6944743 - 6944783
Alignment:
Q  141 tttattaaaaacatgatccctgctcaagacgaacagagacc 181  Q
    |||||||||||| |||||||||| ||||| |||||||||||    
T  6944743 tttattaaaaacctgatccctgcacaagatgaacagagacc 6944783  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 29487543 - 29487503
Alignment:
Q  141 tttattaaaaacatgatccctgctcaagacgaacagagacc 181  Q
    ||||||||||||  ||||||||||||||| |||||||||||    
T  29487543 tttattaaaaaccagatccctgctcaagatgaacagagacc 29487503  T

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