View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16633_low_15 (Length: 221)
Name: NF16633_low_15
Description: NF16633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16633_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 44035231 - 44035416
Alignment:
| Q |
16 |
tctgatataaagaaaatgactgaatccttcaaagttaaactaggagaaggtggttatggtcatgtatacaaaggaaaattgatcaatggtggttctgtgg |
115 |
Q |
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| T |
44035231 |
tctgatataaagaaaatgactgaatccttcaaagttaaactaggagaaggtggttatggttctgtatacaaaggaaaattgctcaatggtggttctgtgg |
44035330 |
T |
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| Q |
116 |
ctgtaaaagtattgaatggctcaaaagggtgtggagaagatttcatcaatgaagtagcaggcatatgcaaaacatctcatgttaat |
201 |
Q |
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| T |
44035331 |
ctgtaaaagtattgagtgagtcaaaagggtgtggagaagatttcataaatgaagtggcaaccatatgcaaaacatctcatgttaat |
44035416 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 31146005 - 31145913
Alignment:
| Q |
13 |
tattctgatataaagaaaatgactgaatccttcaaagttaaactaggagaaggtggttatggtcatgtatacaaaggaaaattgatcaatggt |
105 |
Q |
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| T |
31146005 |
tattcagaaataaagaaaatgacagactctttcaaggttaaacttggtcaaggtggttttggtgttgtgtacaaaggaaagttattcaatggt |
31145913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 31213824 - 31213896
Alignment:
| Q |
20 |
atataaagaaaatgactgaatccttcaaagttaaactaggagaaggtggttatggtcatgtatacaaaggaaa |
92 |
Q |
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| T |
31213824 |
atatcaagaaaatgactaacaacttcgaagtcaaactaggacaaggtggttatggtacagtatacaaaggaaa |
31213896 |
T |
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