View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16633_low_2 (Length: 587)
Name: NF16633_low_2
Description: NF16633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16633_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 134 - 408
Target Start/End: Complemental strand, 6704789 - 6704515
Alignment:
| Q |
134 |
atgtgttggtaagaagtacatttctaggaagttgtcttccatttctgttttacttgagtttcaaactcatgtaaattgtgaatagagttaaggtgtttgt |
233 |
Q |
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| T |
6704789 |
atgtgttggtaagaagtacatttcttggaagttgtcttccatttctgttttatttgagtttgaaactcatgtaaattgtgaatagagttaaggtgtttgt |
6704690 |
T |
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| Q |
234 |
ctattgaactcaacgcatatatataattatgtgacttctactacatagggcattaggtttgtgtattaagtttggtggaagtggaattcatgtattatca |
333 |
Q |
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| T |
6704689 |
ctattgaactcaacgcatatatataattatgtgacttctactacatagggcattaggtttgtgtattaagtttggtggaagtggaattcatgtattatca |
6704590 |
T |
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| Q |
334 |
agttaggtgtagtgtaactattcaaaaacaaaaacttataagttaaagagatataataaatttcttctcataggg |
408 |
Q |
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| T |
6704589 |
agttaggtgtagtgtaactatacaaaaacaaaaacttataagttaaagagatataataaatttcttctcataggg |
6704515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 461 - 569
Target Start/End: Complemental strand, 6704461 - 6704353
Alignment:
| Q |
461 |
cataatgcattgttttgagttgaacctaactgaaccattttaaaactaatttataaatgtgagaaatgcgtctatctataaatacatatttaagttcgca |
560 |
Q |
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| T |
6704461 |
cataatgcattactttgagttgaacctaactcaaccattttaaaactaatttgtaaatgtgaggaatgcgtctatctataaatacatatttaagttcgca |
6704362 |
T |
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| Q |
561 |
acattcaac |
569 |
Q |
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| T |
6704361 |
acattcaac |
6704353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 6704881 - 6704797
Alignment:
| Q |
16 |
atactattgtggattgcatatataggaatgtctgaaaaggtaatagaatgtgtttttcaccaaaagtagattaaaatgggaagct |
100 |
Q |
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| T |
6704881 |
atactattgtggattgcatatataggaatgtctgaaaaggtaatagaatgtgtttttcaccaaaagtatattaaaatgggaagct |
6704797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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