View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16633_low_9 (Length: 292)
Name: NF16633_low_9
Description: NF16633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16633_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 24508518 - 24508793
Alignment:
| Q |
1 |
aatggtgaggatgaaattttagctaaactcctctttgcttgtccagaatccattgaagacgtaactgtgaggggtaagactgcattgcatattgctgtgc |
100 |
Q |
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| T |
24508518 |
aatggtgaggatgaaattttagctaaactcctctttgcttgtccagaatccattgaagacgtaactgtgaggggtaagactgcattgcatattgctgtgc |
24508617 |
T |
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| Q |
101 |
aaaataacaagtatcaggttcttgaactcctagtttgctttctcaagaaaaataccaagagaggtgcaagaaaattagaatataaaattctaaatcaaaa |
200 |
Q |
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| T |
24508618 |
aaaataaccagtatgaggttcttaaactcctagtttgctttctcaagaaaaataccaagagaggtgcaaggaaattagaatataaaattctaaatcaaaa |
24508717 |
T |
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| Q |
201 |
ggatgagattggcaatacaattttgcacatattagcggcgcta---atgatccagccacatccacagcctgaggta |
273 |
Q |
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| T |
24508718 |
ggatgagattggcaacaccattttgcacatattagcggcgctaatgatgatccagccaaatccacagcctgaggta |
24508793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 27712460 - 27712650
Alignment:
| Q |
17 |
ttttagctaaactcctctttgcttgtccagaatccattgaagacgtaactgtgaggggtaagactgcattgcatattgctgtgcaaaataacaagtatca |
116 |
Q |
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| T |
27712460 |
ttttagctaagttccttgttgcttgtcctgattctattgaagacgtgactgtgaggggtgagactgctctgcatatagctttgaaaaataacaaattcaa |
27712559 |
T |
|
| Q |
117 |
ggttcttgaactcctagtttgctttctcaagaaaaataccaagagaggtgcaagaaaattagaatataaaattctaaatcaaaaggatgag |
207 |
Q |
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| T |
27712560 |
ggcccttgatcttcttgtttgttttcttaagagaaataggaagagagatgcaagaaagttagaatatagaacactaaatcagaaggatgag |
27712650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 230
Target Start/End: Complemental strand, 17294020 - 17293793
Alignment:
| Q |
3 |
tggtgaggatgaaattttagctaaactcctctttgcttgtccagaatccattgaagacgtaactgtgaggggtaagactgcattgcatattgctgtgcaa |
102 |
Q |
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|||||||| |||| ||||||||||| | || ||||||||||| | |||||| |||| || |||||| ||||| | |||||| |||||||||| ||| || |
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| T |
17294020 |
tggtgaggttgaacttttagctaaattactttttgcttgtccgaattccattcaagatgtgactgtggggggtgaaactgcactgcatattgcggtgaaa |
17293921 |
T |
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| Q |
103 |
aataacaagtatcaggttcttgaactcctagtttgctttctcaagaaaaataccaagagaggtgcaagaaaattagaatataaaattctaaatcaaaagg |
202 |
Q |
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| T |
17293920 |
aataaaaactttgaggctcttcatctccttgtttgctttcttaggaaaaatatcgaaagaggtgctagagagtttgaatataacatactaaatcacaagg |
17293821 |
T |
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| Q |
203 |
atgagattggcaatacaattttgcacat |
230 |
Q |
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| T |
17293820 |
atgaggatgacaacaccattttgcacat |
17293793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 4819195 - 4819286
Alignment:
| Q |
7 |
gaggatgaaattttagctaaactcctctttgcttgtccagaatccattgaagacgtaactgtgaggggtaagactgcattgcatattgctgt |
98 |
Q |
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|||| |||| |||||||||| | |||||||||||||| ||||| |||||| || | ||||||||| | |||||||||||||||||||||| |
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| T |
4819195 |
gaggttgaacttttagctaattttctctttgcttgtccggaatctattgaatacttgactgtgaggtttgagactgcattgcatattgctgt |
4819286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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