View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_high_12 (Length: 415)
Name: NF16634_high_12
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 7 - 403
Target Start/End: Complemental strand, 35045495 - 35045099
Alignment:
| Q |
7 |
attgtcatgaagacaagaaggttatgggaggtcagggattggaacttcctttgacatctgataatcatgaaggttctaagcctgaaactaagactgatag |
106 |
Q |
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| T |
35045495 |
attgtcatgaagacaagaaggttatgggaggtcagggattggaacttcctttgacatctgataatcatgaaggttctaagcctgaaactaagactgatag |
35045396 |
T |
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| Q |
107 |
ttgcaccatgggtgataccaatgggccagaactggcatcttcaccaatgcaagtagatactgagaaagtgaatggcgagtgtttatctgtgccatctgtg |
206 |
Q |
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| T |
35045395 |
ttgcaccatgggtgataccaatgggccagaactggcatcttcaccaatgcaagtagataccgagaaagtgaatggcgagtgtttatctgtgccatctgtg |
35045296 |
T |
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| Q |
207 |
gatgataaatgcgtgagtgaatcaaaggtggatccagctgcagattttctgggtgctagagatgttggtaatgcttttgaccacggtgatgttaagcaag |
306 |
Q |
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| T |
35045295 |
gatgataaatgcgtgagtgaatcaaaggtggatccagctgcagattttctgggtgctagagatgttggtaatgcttttgaccacggtgatgttaagcaag |
35045196 |
T |
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| Q |
307 |
attctttcaacaggaataatcttgattgtgctaaggctactgatcacaatggctgtgccttagagcagcttggtgttttgaatgaagattgtatacc |
403 |
Q |
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| T |
35045195 |
attctttcaacaggaataatcttgattgtgctaaggctactgatcacaatggctgtgccttagagcagcttggtgttttgaatgaagattgtatacc |
35045099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 35022242 - 35022145
Alignment:
| Q |
238 |
atccagctgcagattttctgggtgctagagatgttggtaatgcttttgaccacggtgatgttaagcaagattctttcaacaggaataatcttgattgt |
335 |
Q |
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| T |
35022242 |
atccagctgcagattccgtgggtgctagagatgttggtaatgctttggtccatggtgatgttaagcaagattctttcaacaggaataatcttgattgt |
35022145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 179
Target Start/End: Complemental strand, 35022272 - 35022241
Alignment:
| Q |
148 |
caccaatgcaagtagatactgagaaagtgaat |
179 |
Q |
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| T |
35022272 |
caccaatgcaagtagatactgagaaagtgaat |
35022241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 35022365 - 35022318
Alignment:
| Q |
6 |
aattgtcatgaagacaagaaggttatgggaggtcagggattggaactt |
53 |
Q |
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| T |
35022365 |
aattgtcatgaagacaagaaggttatggatggacagggattgaaactt |
35022318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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