View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_high_13 (Length: 399)
Name: NF16634_high_13
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 8 - 383
Target Start/End: Complemental strand, 33236481 - 33236106
Alignment:
| Q |
8 |
catcatcatggaggtgggtcagataaactttatccaggatttgagactcatcaagatcaaatgggtttggcagtttagttccattggacaatgacatatt |
107 |
Q |
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| T |
33236481 |
catcatcatggaggtgggtcagataaactttatccaggatttgagactcatcaagatcaaatgggtttggcagtttagttccattggacaatgacatatt |
33236382 |
T |
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| Q |
108 |
gataaattcaactttaggctattatcaaatatatatttttaacttatagtgaataaggatactttgtgttgtagtattggtgctcccaccacatatttat |
207 |
Q |
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| T |
33236381 |
gataaattcaactttaggctattatcaaatatatatttttaacttatagtgaataaggatactttgtgttgtagtattggtgctcccaccacatatttat |
33236282 |
T |
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| Q |
208 |
agcctctaaagtcataagagtttacacttggcataactactttagtatataagatttgtgttttacttgaatataaagaaaaaatatacttggtagcttc |
307 |
Q |
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| T |
33236281 |
agcctctaaagtcataagagtttacacttggcataactactttagtatataagatttgtgttttacttgaatataaagaaaaaatatacttggtagcttc |
33236182 |
T |
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| Q |
308 |
taatggggccttgttcaggtgtgaaacatgccactctgatatgattttcagaaaatgccccttataggcttcatta |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33236181 |
taatggggccttgttcaggtgtgaaacatgccactctgatatgattttcagaaaatgccccttataggcttcatta |
33236106 |
T |
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