View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_high_17 (Length: 346)
Name: NF16634_high_17
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 332
Target Start/End: Complemental strand, 52514910 - 52514590
Alignment:
| Q |
12 |
agagaggtacataacagaaatggagtattaccgtgagaagctgaagaatgatgaagtcatcagtgatgctgtgccacttcgacagcgacttcctgaacca |
111 |
Q |
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| T |
52514910 |
agagaggtacataacagaaatggagtattaccgtgagaagctgaagaatgatgaagtcatcagtgatgctgtgccacttcgacagcgacttcctgaacca |
52514811 |
T |
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| Q |
112 |
gatactgacatgttgaatgctgaggcagactctcttcaaactccggagcagagtagttcggacggaagtgatgactatgaagatgataaggcgaaggaga |
211 |
Q |
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| T |
52514810 |
gatactgacatgttgaatgctgaggcagactctcttcaaactccggagcagagtagtttggacggaagtgatgactatgaagatgataaggcgaaggaga |
52514711 |
T |
|
| Q |
212 |
aagactttagtgtggattcgttgcctgttataggacttggtgctgaatctatggattcagtagagagatcgtccaagttgggtttatgagcatcttcagg |
311 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52514710 |
aagactttagtgtggattcattgcctgttataggacttggtgctgaatctatggattcagtagagagatcgtccaagttgggtttatgagcatcttcagg |
52514611 |
T |
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| Q |
312 |
agagattgagaaagaagaaat |
332 |
Q |
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|||||| |||||||||||||| |
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| T |
52514610 |
agagatagagaaagaagaaat |
52514590 |
T |
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