View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_high_22 (Length: 300)
Name: NF16634_high_22
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 35161754 - 35162034
Alignment:
| Q |
1 |
gtttgttaatggaagatgataatgtgttccactttagagaattggggcttagggattttgagtaattgaacaaaccctaagccgcaattcacacttatca |
100 |
Q |
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| T |
35161754 |
gtttgttaatggaagatgataatgtgttccactttagagaattggggcttagggattttgagtaattgaacaaaccctaagccccaattcacacttatca |
35161853 |
T |
|
| Q |
101 |
ctaatatcttctataaatatcataattcataatttctttattattctctctcagacgtatgtcaaaaaatgcaacatcctccttcgtcttctgctgctct |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35161854 |
ctaatttcttctataaatatcataattcataatttctttattattctctctcagacgtatgtcaaaaaatgcaacatcctccttcgtcttctgctgctct |
35161953 |
T |
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| Q |
201 |
gaaatcccgcagaagaacccgcagaagaagcccagttcttcaaccaagtggtgagtctgttcgttagttatgttgattcactatt |
285 |
Q |
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| T |
35161954 |
gaaatcccgcagaagaacccgcagaagaagccgagttcttcaaccaagtggtgagtctgttc----gttatgttgattcactatt |
35162034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 44798355 - 44798080
Alignment:
| Q |
1 |
gtttgttaatggaagatgataatgtgttccactttagagaatt-ggggcttagggattttgagtaattgaacaaaccctaagccgcaattcacacttatc |
99 |
Q |
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|||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
44798355 |
gtttgttaatggaagatgataatgtgttccgct---gtgaattgggggcttagggattttgagaaattgaacaaaccctaagccccaattcacacttatc |
44798259 |
T |
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| Q |
100 |
actaatatcttctataaatatcataattcataat------ttctttattattctctctcagacgtatgtcaaaaaatgcaacatcctccttcgtcttctg |
193 |
Q |
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| T |
44798258 |
actaatttcttctttaaatatcataattcataattgcttcttctttattattctctctcagacgtacatcaaaaaatgcaacatcctccttcgtcctctg |
44798159 |
T |
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| Q |
194 |
ctgctctgaaatcccgcagaagaacccgcagaagaagcccagttcttcaaccaagtggtgagtctgttcgttagttatgttgattcactatt |
285 |
Q |
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| T |
44798158 |
ctgctctgaaaccccgcaga---------agaagaagctcagttcttcaatcaagtggtgagtct----gttggttatgttgattcactatt |
44798080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 86 - 285
Target Start/End: Complemental strand, 44631292 - 44631100
Alignment:
| Q |
86 |
aattcacacttatcactaatatcttctataaatatcataattcataatt------tctttattattctctctcagacgtatgtcaaaaaatgcaacatcc |
179 |
Q |
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| T |
44631292 |
aattcacacttatcactaatttcttctttaaatatcataattcataattgcttcttctttattattctctctcagacgtacatcaaaaaatgcaacatcc |
44631193 |
T |
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| Q |
180 |
tccttcgtcttctgctgctctgaaatcccgcagaagaacccgcagaagaagcccagttcttcaaccaagtggtgagtctgttcgttagttatgttgattc |
279 |
Q |
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| T |
44631192 |
tccttcgtcctctgctgctctgaaaccccgcaga---------agaagaagctcagttcttcaatcaagtggtgagtct----gttggttatgttgattc |
44631106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 39840048 - 39840149
Alignment:
| Q |
1 |
gtttgttaatggaagatgataa---tgtgttccactttagagaattggggcttagggattttgagtaattgaacaaaccctaagccgcaattcacactta |
97 |
Q |
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| T |
39840048 |
gtttgttaatggaagatgataataatgtgttccactgtagagaattgtggcttagggattttgagaaattgaacaaaccctaagccccaattcacactta |
39840147 |
T |
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| Q |
98 |
tc |
99 |
Q |
| |
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|| |
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| T |
39840148 |
tc |
39840149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 39844963 - 39845026
Alignment:
| Q |
6 |
ttaatggaagatgataatgtgttccactttagagaattggggcttagggattttgagtaattga |
69 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
39844963 |
ttaatggaagatgataatgtgttccactgtagagaattggggcttagggattttgagaaattga |
39845026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 39840189 - 39840227
Alignment:
| Q |
134 |
ttctttattattctctctcagacgtatgtcaaaaaatgc |
172 |
Q |
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|||||| ||||||||||||||||||| |||||||||||| |
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| T |
39840189 |
ttctttcttattctctctcagacgtacgtcaaaaaatgc |
39840227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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