View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_high_25 (Length: 276)
Name: NF16634_high_25
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 8789964 - 8790194
Alignment:
| Q |
16 |
ctctctattatttcttttacattcactattcatcacaaggtcttaaattacggttgcatcgcaatttgttagagtagaaaatccgattctaaaggatttt |
115 |
Q |
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| T |
8789964 |
ctctctattatttcttttacattcactattcatcacaaggtcttaaattacggttgcatcgcaatttgttagagtagaaaatccgattctaaaggatttt |
8790063 |
T |
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| Q |
116 |
gataaataaaaacacaaggacacaacaattgatcacaaagttcggtcaattgtgactttgtctctgacaccagaatgactggtgtagttttctagtatta |
215 |
Q |
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| T |
8790064 |
gataaataaaaacacaaggacacaacaattgatcacaaagttcggtcaattgtgactttgtctctgacaccagaatgactggtgtagttttctagtatta |
8790163 |
T |
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| Q |
216 |
tgcattgaattagggtaacacagtacaaaac |
246 |
Q |
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| T |
8790164 |
tgcattgaattagggtaacacagtacaaaac |
8790194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 4918230 - 4918322
Alignment:
| Q |
117 |
ataaataaaaacacaaggacacaacaattgatcacaaagttcggtcaattgtgactttgtctctgacaccagaatgactggtgtagttttcta |
209 |
Q |
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| T |
4918230 |
ataaaaaaacacacaagaacacaacaattgatcacagagttcggccaattgtgcatatatctctgacaatagatagactgttgtagttttcta |
4918322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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