View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_high_30 (Length: 216)
Name: NF16634_high_30
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_high_30 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 37233005 - 37232790
Alignment:
| Q |
1 |
aataaggtggatttatcatggtaatattctttaaacgcaaacggggaaagatgctatatccttcgaaagaaactaaggaacggatctttgatttcaaaac |
100 |
Q |
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| T |
37233005 |
aataaggtggatttatcatggtaatattctttaaacgcaaacggggaaagatgctatatccttcgaaagaaactaaggaacggatctttgatttcaaaac |
37232906 |
T |
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| Q |
101 |
tgcaaattagatatgatagcaatcaaccacataaaaagaaagggcagaattcatcatactcgggcggcatgtaaccaaatgtgcctgccatgtgattagt |
200 |
Q |
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| T |
37232905 |
tgcaaattagatatgatagcaatcaaccacataaaaagaaagggcagaattcatcatactcgggcggcatgtaaccaaatgtgcctgccatgtgattagt |
37232806 |
T |
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| Q |
201 |
gttatctgttgaattt |
216 |
Q |
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| T |
37232805 |
gttatctgttgaattt |
37232790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 37385086 - 37385158
Alignment:
| Q |
144 |
gcagaattcatcatactcgggcggcatgtaaccaaatgtgcctgccatgtgattagtgttatctgttgaattt |
216 |
Q |
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| T |
37385086 |
gcagaattcatcatactcaggtggcatgtaaccaaatgtgccagccacatgaagagtgttatctgttgaattt |
37385158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 37223903 - 37223838
Alignment:
| Q |
148 |
aattcatcatactcgggcggcatgtaaccaaatgtgcctgccatgtgattagtgttatctgttgaa |
213 |
Q |
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| T |
37223903 |
aattcatcatactcaggtggcatgtaaccaaatgtgcctgccacatgatcagtgttatctgctgaa |
37223838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 37218189 - 37218121
Alignment:
| Q |
148 |
aattcatcatactcgggcggcatgtaaccaaatgtgcctgccatgtgattagtgttatctgttgaattt |
216 |
Q |
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| T |
37218189 |
aattcatcatactcaggtggcatgtaaccaaatgtgcctgccacatgaacagtgttatctgctgaattt |
37218121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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