View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_high_6 (Length: 528)
Name: NF16634_high_6
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 40589143 - 40588629
Alignment:
| Q |
1 |
aaattctcacattatatctatatcttccacatcttgctctaattgtaccaaaccaactagttagcctttgttttctannnnnnnnnnnntttttcaaacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40589143 |
aaattctcacattatatctatatcttccacatcttgctctaattgtaccaaaccaactagttagcctttgttttctactctctctctcttttttcaaacc |
40589044 |
T |
|
| Q |
101 |
aaataactaatannnnnnncgaagatcatgagaggaggaatttgcagtatacaacttcaagcacttacacaagaagctgcaactgttgttaaacaagcag |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40589043 |
aaataactaatatttttttcgaagatcatgagaggaggaatttgtagtatacagcttcaagcacttacacaagaagctgcaactgttgttaaacaagcag |
40588944 |
T |
|
| Q |
201 |
tgaatctagcaacaagaagaggtcatgcacaagtgacacctcttcatgttgctagtgctatgcttgcaacttcaacattacttttaagaatagcttgtct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |
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| T |
40588943 |
tgaatctagcaacaagaagaggtcatgcacaagtgacacctcttcatgttgctagtgctatgcttgcaacttcaacaggaattttaagaaaagcttgtct |
40588844 |
T |
|
| Q |
301 |
tcaatgtcactctcaccctcttcaatgcaaagctcttgagctttgtttcaatgttgcactcaaccgtttacctgcatcaacacaaagtccactattaggt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40588843 |
tcaatgtcactctcaccctcttcaatgcaaagctcttgagctttgtttcaatgttgcactcaaccgtttacctgcatcaacacaaagtccactattaggt |
40588744 |
T |
|
| Q |
401 |
cctcaatattcaaccactccttcactttctaatgctttggttgcagctttcaaacgtgctcaggctcaccaacgacgtggaacgatcgagaatcagcaac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40588743 |
cctcaatattcaaccactccttcactttctaatgctttggttgcagctttcaaacgtgctcaggctcaccaacgacgtggaacgatcgagaatcagcaac |
40588644 |
T |
|
| Q |
501 |
agcagcatattcttg |
515 |
Q |
| |
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||||||||||||||| |
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| T |
40588643 |
agcagcatattcttg |
40588629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 25118020 - 25118105
Alignment:
| Q |
284 |
ttaagaatagcttgtcttcaatgtcactctcaccctcttcaatgcaaagctcttgagctttgtttcaatgttgcactcaaccgttt |
369 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||| ||| | |||||||| |||||||| |||||||| ||||| |
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| T |
25118020 |
ttaagaacagcttgtcttcaatctcactctcaccctcttcaatgcaaggctttagagctttgcttcaatgtcgcactcaatcgttt |
25118105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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