View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16634_high_8 (Length: 505)
Name: NF16634_high_8
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 30377126 - 30377513
Alignment:
| Q |
1 |
gtggcggtgtgagattaagacattatttttgtcttgactaagagattgactttaggatcataaggttggttagagtcttagagatattattgagatacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30377126 |
gtggcggtgtgagattaagacattatttttgtcttgactaagagattgactttaggatcataaggttggttagag--------atattattgagatacct |
30377217 |
T |
|
| Q |
101 |
ttaggacacgttctcatcattcatggtccttcgaggaaggcacaatgttttgttaatttatgtacacgccaaaatccaaatgaagttttggtggataata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30377218 |
ttaggacacgttctcatcattcatggtccttcgaggaaggcacaatgttttgttaacttatgtacactccaaaatccaaatgaagttttggtggataata |
30377317 |
T |
|
| Q |
201 |
tatgccataca-ttcccacaagatattcgattcaagaagagaaagtacatgtacatgcaaccaaactcaattatcatcaaatcaccaaccaacgtgtgta |
299 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30377318 |
tatgccatacaattcccacaagatattcgattcaagaagagaaagtacatgtacatgcaaccaaactcaattatcatcaaatcaccaaccaacgtttgta |
30377417 |
T |
|
| Q |
300 |
atatgcattgcatgtagcacgtaccatacggcataataatatgtatgtacaccattgtatgaatttgactcagagaaaaatcagtctcctttaatg |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30377418 |
atatgcattgcatgtagcacgtaccatacggcataataatatgtatgtacaccattgtatgaatttgactcagagaaaaatcagtctcctttaatg |
30377513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 430 - 486
Target Start/End: Original strand, 30377544 - 30377600
Alignment:
| Q |
430 |
tttggcatgccatgtattttttggtatgtcaatgaatcaatgatatattatatgtac |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30377544 |
tttggcatgccatgtattttttggtatgtcaatgaatcaatgatatattatatgtac |
30377600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University