View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16634_low_12 (Length: 445)

Name: NF16634_low_12
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16634_low_12
NF16634_low_12
[»] chr3 (16 HSPs)
chr3 (13-271)||(37636002-37636261)
chr3 (13-271)||(37638916-37639175)
chr3 (14-271)||(37650116-37650374)
chr3 (13-271)||(37644290-37644549)
chr3 (13-271)||(37647203-37647462)
chr3 (280-429)||(37644069-37644218)
chr3 (280-429)||(37638695-37638844)
chr3 (280-429)||(37646982-37647131)
chr3 (280-429)||(37635781-37635930)
chr3 (280-429)||(37649895-37650044)
chr3 (230-306)||(37644220-37644296)
chr3 (230-306)||(37650046-37650122)
chr3 (230-306)||(37635932-37636008)
chr3 (230-306)||(37638846-37638922)
chr3 (230-306)||(37647133-37647209)
chr3 (344-427)||(37633326-37633405)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 37636261 - 37636002
Alignment:
Q  13 gaacaaaaatcaacattgcctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttatttagga 112  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37636261 gaacaaaaatcaacactacctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttgtttagga 37636162  T
Q  113 taatgtgaaactgagatacaaatagttacaaatggtaaacaag-ttatgaaaaatactcaaaaataatgttgtttgttgtgcaagcatgtctctcatttc 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37636161 taatgtgaaactgagatacaaatagttacaaatgggaaacaagtttatgaaaaatactaaaaaataatgttgtttgttgtgcaagcatgtctctcatttc 37636062  T
Q  212 aaagctcgaaacagtgatccaacaatggaaaatgaagacacatatgtcttaaaccaacaa 271  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37636061 aaagctccaaacagtgatccaacaatggaaaatgaagatacatatgtcttaaaccaacaa 37636002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 37639175 - 37638916
Alignment:
Q  13 gaacaaaaatcaacattgcctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttatttagga 112  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37639175 gaacaaaaatcaacactacctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttgtttagga 37639076  T
Q  113 taatgtgaaactgagatacaaatagttacaaatggtaaacaag-ttatgaaaaatactcaaaaataatgttgtttgttgtgcaagcatgtctctcatttc 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37639075 taatgtgaaactgagatacaaatagttacaaatgggaaacaagtttatgaaaaatactaaaaaataatgttgtttgttgtgcaagcatgtctctcatttc 37638976  T
Q  212 aaagctcgaaacagtgatccaacaatggaaaatgaagacacatatgtcttaaaccaacaa 271  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37638975 aaagctccaaacagtgatccaacaatggaaaatgaagatacatatgtcttaaaccaacaa 37638916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 37650374 - 37650116
Alignment:
Q  14 aacaaaaatcaacattgcctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttatttaggat 113  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37650374 aacaaaaatcaacactacctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttgtttaggat 37650275  T
Q  114 aatgtgaaactgagatacaaatagttacaaatggtaaacaag-ttatgaaaaatactcaaaaataatgttgtttgttgtgcaagcatgtctctcatttca 212  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37650274 aatgtgaaactgagatacaaatagttacaaatgggaaacaagtttatgaaaaatactaaaaaataatgttgtttgttgtgcaagcatgtctctcatttca 37650175  T
Q  213 aagctcgaaacagtgatccaacaatggaaaatgaagacacatatgtcttaaaccaacaa 271  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37650174 aagctccaaacagtgatccaacaatggaaaatgaagatacatatgtcttaaaccaacaa 37650116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 37644549 - 37644290
Alignment:
Q  13 gaacaaaaatcaacattgcctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttatttagga 112  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  37644549 gaacaaaaatcaacactacctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatgaaacactaacaaatagtaactatttttgtttagga 37644450  T
Q  113 taatgtgaaactgagatacaaatagttacaaatggtaaacaag-ttatgaaaaatactcaaaaataatgttgtttgttgtgcaagcatgtctctcatttc 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37644449 taatgtgaaactgagatacaaatagttacaaatgggaaacaagtttgtgaaaaatactaaaaaataatgttgtttgttgtgcaagcatgtctctcatttc 37644350  T
Q  212 aaagctcgaaacagtgatccaacaatggaaaatgaagacacatatgtcttaaaccaacaa 271  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37644349 aaagctccaaacagtgatccaacaatggaaaatgaagatacatatgtcttaaaccaacaa 37644290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 37647462 - 37647203
Alignment:
Q  13 gaacaaaaatcaacattgcctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttatttagga 112  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37647462 gaacaaaaatcaacactacctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttgtttagga 37647363  T
Q  113 taatgtgaaactgagatacaaatagttacaaatggtaaacaag-ttatgaaaaatactcaaaaataatgttgtttgttgtgcaagcatgtctctcatttc 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37647362 taatgtgaaactgagatacaaatagttacaaatgggaaacaagtttgtgaaaaatactaaaaaataatgttgtttgttgtgcaagcatgtctctcatttc 37647263  T
Q  212 aaagctcgaaacagtgatccaacaatggaaaatgaagacacatatgtcttaaaccaacaa 271  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  37647262 aaagctccaaaccgtgatccaacaatggaaaatgaagatacatatgtcttaaaccaacaa 37647203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 280 - 429
Target Start/End: Complemental strand, 37644218 - 37644069
Alignment:
Q  280 tcagcatgatccaatatagtgaacaaatatctaattgcatttttaaaatggcagatatgtgaaaaatatctaattctcttctcttttctcctcattacgt 379  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  37644218 tcagcatgatccaatatagtgaacaaatatccaattgcatttttaaaatggcagatatgtgaaaaatatccaattctcttctcttttctcctcagtacgt 37644119  T
Q  380 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatct 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37644118 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatct 37644069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 280 - 429
Target Start/End: Complemental strand, 37638844 - 37638695
Alignment:
Q  280 tcagcatgatccaatatagtgaacaaatatctaattgcatttttaaaatggcagatatgtgaaaaatatctaattctcttctcttttctcctcattacgt 379  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  37638844 tcagcatgatccaatatagtgaacaaatatccaattgcatttttaaaatggcagatatgtgaaaaatatccaattctcttctcttttctcctcagtacgt 37638745  T
Q  380 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatct 429  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37638744 agatgttcttctaaccaaaatagtctctcattttaatcataatgtgatct 37638695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 280 - 429
Target Start/End: Complemental strand, 37647131 - 37646982
Alignment:
Q  280 tcagcatgatccaatatagtgaacaaatatctaattgcatttttaaaatggcagatatgtgaaaaatatctaattctcttctcttttctcctcattacgt 379  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  37647131 tcagcatgatccaatatagtgaacaaatatccaattgcatttttaaaatggcagatatgtgaaaaatatccaattctcttctattttctcctcagtacgt 37647032  T
Q  380 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatct 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37647031 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatct 37646982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 280 - 429
Target Start/End: Complemental strand, 37635930 - 37635781
Alignment:
Q  280 tcagcatgatccaatatagtgaacaaatatctaattgcatttttaaaatggcagatatgtgaaaaatatctaattctcttctcttttctcctcattacgt 379  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  37635930 tcagcatgatccaatatagtgaacaaatatccaattgcatttttaaaatggcagatatgtgaaaaatatccaattctcttctcttttctcctcagtacgt 37635831  T
Q  380 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatct 429  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  37635830 agatgttcttctaaccaaaatagtctctcaatttaatcataatgtgatct 37635781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 280 - 429
Target Start/End: Complemental strand, 37650044 - 37649895
Alignment:
Q  280 tcagcatgatccaatatagtgaacaaatatctaattgcatttttaaaatggcagatatgtgaaaaatatctaattctcttctcttttctcctcattacgt 379  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||| |||||    
T  37650044 tcagcatgatccaatatagtgaacaaatatccaatagcatttttaaaatggtagatatgtgaaaaatatccaattctcttctcatttctcctcagtacgt 37649945  T
Q  380 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatct 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37649944 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatct 37649895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 37644296 - 37644220
Alignment:
Q  230 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37644296 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 37644220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 37650122 - 37650046
Alignment:
Q  230 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37650122 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 37650046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 37636008 - 37635932
Alignment:
Q  230 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 306  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37636008 ccaacaatggaaaatgaagacacatatgtcttaaacccacaactcaaacttcagcatgatccaatatagtgaacaaa 37635932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 37638922 - 37638846
Alignment:
Q  230 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 306  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37638922 ccaacaatggaaaatgaagacacatatgtcttaaacccacaactcaaacttcagcatgatccaatatagtgaacaaa 37638846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 37647209 - 37647133
Alignment:
Q  230 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  37647209 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttttgcatgatccaatatagtgaacaaa 37647133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 427
Target Start/End: Complemental strand, 37633405 - 37633326
Alignment:
Q  344 aatatctaattctcttctcttttctcctcattacgtagatgttcttctaaccaaagtagtctctcattttaatcataatgtgat 427  Q
    |||||| ||||||||||||||||||||| |    |||||||||||||||| |||| ||  ||||||||||||| ||||| ||||    
T  37633405 aatatccaattctcttctcttttctcctta----gtagatgttcttctaatcaaaatacgctctcattttaattataatatgat 37633326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University