View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16634_low_13 (Length: 431)
Name: NF16634_low_13
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 21 - 413
Target Start/End: Complemental strand, 1963240 - 1962848
Alignment:
| Q |
21 |
tcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1963240 |
tcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgt |
1963141 |
T |
|
| Q |
121 |
cattgcttctataggacccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaa |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963140 |
cattgcttctataggacccttttcaatttccaggaagctattaataagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaa |
1963041 |
T |
|
| Q |
221 |
gattgacttgatctatcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcac |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963040 |
gattgacttgatctatcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcac |
1962941 |
T |
|
| Q |
321 |
atgaagtttccttatccaacttgagcaaatggaagtatgaagacaaagaggtgacagaagcagggtagtaaacataggacaacaagttgaatt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1962940 |
atgaagtttccttatccaacttgagcaaatggaagtatgaagacaaagaggtgacagaagcagggtagtaaacataggacaacaagttgaatt |
1962848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 22 - 413
Target Start/End: Original strand, 2015190 - 2015581
Alignment:
| Q |
22 |
cagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtc |
121 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2015190 |
cagacattcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtc |
2015289 |
T |
|
| Q |
122 |
attgcttctataggacccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaag |
221 |
Q |
| |
|
| ||||||||||||||| ||||| ||||| | ||| |||||||| |||| ||||||||||||||| ||||||||||||| |||||| ||| | ||||||| |
|
|
| T |
2015290 |
agtgcttctataggaccgttttcgatttctatgaaactattaataagaataccatcaaaaagacgcaatttttcaacaccttggagtaagtatttgtaag |
2015389 |
T |
|
| Q |
222 |
attgacttgatctatcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcaca |
321 |
Q |
| |
|
||||||| ||||||||||||||||| |||| || |||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| || |
|
|
| T |
2015390 |
attgactggatctatcttgagctagctcaaaaagatcccgaccatgaatcggaacactacctggtatttgaataggcccaggaagatctctgtactcgca |
2015489 |
T |
|
| Q |
322 |
tgaagtttccttatccaacttgagcaaatggaagtatgaagacaaagaggtgacagaagcagggtagtaaacataggacaacaagttgaatt |
413 |
Q |
| |
|
||| ||||||||||| ||||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2015490 |
tgatgtttccttatctaacttgagcaaatagaagtatgaagacaaactggtggctgaagcagggtagtaaacataggacaacaagttgaatt |
2015581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 37 - 411
Target Start/End: Original strand, 2018588 - 2018962
Alignment:
| Q |
37 |
attagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagga |
136 |
Q |
| |
|
|||| |||||||||| ||| | ||| | ||||||||||| |||||||||||||| ||| | |||| |||||| || ||||| | ||||||||||||| |
|
|
| T |
2018588 |
attatcatcatcacccgatttggttggcgtttggataattggtccaacagcataaacatcagggttgccacttctgtcttctgtgagtgcttctatagga |
2018687 |
T |
|
| Q |
137 |
cccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctat |
236 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||| |
|
|
| T |
2018688 |
cctttttcaatttctaggaagctattaataagaataccatcaaaaagacggaatttttcaacacgttcaagtaagaatttgtaagattgacttgatctat |
2018787 |
T |
|
| Q |
237 |
cttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatc |
336 |
Q |
| |
|
|||||||| |||||| || |||| |||||||||| || ||||| ||||||||||||||||||||| |||||||| |||||| |||||| |||||||||| |
|
|
| T |
2018788 |
cttgagcttggtcaacaagatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactgacatgatgtttccttatt |
2018887 |
T |
|
| Q |
337 |
caacttgagcaaatggaagtatgaagacaaagaggtgacagaagcagggtagtaaacataggacaacaagttgaa |
411 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| |||| ||| |||||||||||||||||| |||||| |
|
|
| T |
2018888 |
caacttgagcaaatagaagtatgaagacaaactggtgactgaagaaggaaagtaaacataggacaacatgttgaa |
2018962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 2433128 - 2432951
Alignment:
| Q |
22 |
cagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtc |
121 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||| |||||| ||| ||||| ||||||||||||| |||||||||| | |||||||||||||| |||||| |
|
|
| T |
2433128 |
cagacactccaacatattagcatcatcgtcagaacttgttattgtctggatgatgggtccaacaggatacacaagaggattttcacttccttcatctgtc |
2433029 |
T |
|
| Q |
122 |
attgcttctataggacccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaaca |
199 |
Q |
| |
|
| ||||| |||||||||| |||| ||||| | ||||||||||| ||||||||||||| || |||| |||||| |||| |
|
|
| T |
2433028 |
agtgcttttataggacccctttccatttctaagaagctattaacaagaacaccatcaacaaaacggtattttttaaca |
2432951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 37 - 355
Target Start/End: Original strand, 2008191 - 2008509
Alignment:
| Q |
37 |
attagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagga |
136 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||||| |||||||||| |||||| || |||| |||| ||| || ||| ||||||| || |||| |
|
|
| T |
2008191 |
attagcatcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagagga |
2008290 |
T |
|
| Q |
137 |
cccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctat |
236 |
Q |
| |
|
||| | || ||||| ||||||||||||| |||||||||||| | || || || |||| || |||| ||| ||||||| |||||||||||||| |
|
|
| T |
2008291 |
cccatctctatttctaggaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgtaagcttgacttgatctat |
2008390 |
T |
|
| Q |
237 |
cttgagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttat |
335 |
Q |
| |
|
||||||||| | ||||| ||||||| ||||| | || |||||||||||||||| ||||||||| | | |||||| ||||||||||| ||||||| || |
|
|
| T |
2008391 |
cttgagctatgctcaag-aaatccctgccatggagtggtacacaacctggtatttttataggctctagtatatctctatactcacatgatgtttcctcat |
2008489 |
T |
|
| Q |
336 |
ccaacttgagcaaatggaag |
355 |
Q |
| |
|
||| ||| |||||| |||| |
|
|
| T |
2008490 |
ccagcttaggcaaatagaag |
2008509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 355
Target Start/End: Original strand, 2011806 - 2012124
Alignment:
| Q |
37 |
attagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagga |
136 |
Q |
| |
|
||||||||||||| |||| ||||| ||| ||||| ||||||||||||| ||| ||| | |||| |||||||||| ||||||| ||| | |||||| |
|
|
| T |
2011806 |
attagcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggt |
2011905 |
T |
|
| Q |
137 |
cccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctat |
236 |
Q |
| |
|
||| |||| ||||| | ||||||||||| |||||||||||| || || || ||| |||| ||| || ||| | ||||||| |||||||||||||| |
|
|
| T |
2011906 |
cccatttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgtaagcttgacttgatctat |
2012005 |
T |
|
| Q |
237 |
cttgagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttat |
335 |
Q |
| |
|
||||| ||| ||||||| | ||||| ||||| | || || || || |||| || ||||||||||| ||||||||||||||||||| ||||||| || |
|
|
| T |
2012006 |
cttgaactatggtcaag-agatccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctctgtactcacatgttgtttcctcat |
2012104 |
T |
|
| Q |
336 |
ccaacttgagcaaatggaag |
355 |
Q |
| |
|
||||||| |||||| |||| |
|
|
| T |
2012105 |
ccaacttaggcaaatagaag |
2012124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 338
Target Start/End: Complemental strand, 1968824 - 1968523
Alignment:
| Q |
37 |
attagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagga |
136 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||| |||||||||| |||||| || |||| |||||||| || ||| ||||||| |||||| |
|
|
| T |
1968824 |
attagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcattgcacttataggt |
1968725 |
T |
|
| Q |
137 |
cccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctat |
236 |
Q |
| |
|
||| | || | ||||||||||||||||| | |||||||||| || || || || || | | |||| ||| |||||| |||||||||||||| |
|
|
| T |
1968724 |
cccatctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctat |
1968625 |
T |
|
| Q |
237 |
cttgagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttat |
335 |
Q |
| |
|
||||||||| | ||||| | ||||| ||||| || || ||||| |||||||||| ||||||||||| | |||||| ||||||||||| ||||||| || |
|
|
| T |
1968624 |
cttgagctacgctcaag-agatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcat |
1968526 |
T |
|
| Q |
336 |
cca |
338 |
Q |
| |
|
||| |
|
|
| T |
1968525 |
cca |
1968523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 2004843 - 2004952
Alignment:
| Q |
69 |
ggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattag |
168 |
Q |
| |
|
|||| ||||||||||||| ||||||| || |||||||||||||||| ||| ||||||| |||||||||| | || ||||| ||||||||||||| || |
|
|
| T |
2004843 |
ggatgatgggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggacccatctccatttctaggaagctattaacaag |
2004942 |
T |
|
| Q |
169 |
aacaccatca |
178 |
Q |
| |
|
|||||||||| |
|
|
| T |
2004943 |
aacaccatca |
2004952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 1964851 - 1964747
Alignment:
| Q |
74 |
atgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattagaacac |
173 |
Q |
| |
|
||||||||||||| ||||||| | |||| |||||||||| |||||| ||||| |||||| ||| |||| ||||| | ||||||||||| ||||||| |
|
|
| T |
1964851 |
atgggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtcccatttccatttctaagaagctattaacaagaacac |
1964752 |
T |
|
| Q |
174 |
catca |
178 |
Q |
| |
|
||||| |
|
|
| T |
1964751 |
catca |
1964747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 355
Target Start/End: Original strand, 2004989 - 2005129
Alignment:
| Q |
215 |
ttgtaagattgacttgatctatcttgagctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctg |
313 |
Q |
| |
|
||||||| ||||||||| |||||||||| | || ||| || | |||| ||||| || || |||||||||||||||| |||||| |||| | ||||| |
|
|
| T |
2004989 |
ttgtaagcttgacttgacctatcttgagttgggctcatgaga-tccctgccatggattggtacacaacctggtatttttataggcactggtatatctcca |
2005087 |
T |
|
| Q |
314 |
tactcacatgaagtttccttatccaacttgagcaaatggaag |
355 |
Q |
| |
|
||||||||||| ||||| | ||||||||| |||||| |||| |
|
|
| T |
2005088 |
tactcacatgatgtttcttcatccaacttaggcaaatagaag |
2005129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 64 - 411
Target Start/End: Complemental strand, 5902376 - 5902029
Alignment:
| Q |
64 |
tgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctatta |
163 |
Q |
| |
|
|||||||||||||||||||| || |||||| | |||| |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5902376 |
tgtttggataatgggtccaatagggtacacagcagggttaccacttccttcttctgtcagtgcttctataggacctttttcaatttccaggaagctatta |
5902277 |
T |
|
| Q |
164 |
attagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttgagctaggtcaagaaaatcccgac |
263 |
Q |
| |
|
|| || | ||||||| | || |||| ||| || || |||||| ||||| ||||||||||| || ||||||||||||||| || ||| | |||||||| |
|
|
| T |
5902276 |
ataagtatgccatcaacagaacagaatcttttaatacgttggagtaagaatttgtaagattggctcgatctatcttgagcttgggcaacgagatcccgac |
5902177 |
T |
|
| Q |
264 |
catgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaagtatgaaga |
363 |
Q |
| |
|
|| |||| || |||||||||||| ||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
5902176 |
cacgaattggtacacaacctggtgcttgaataggttctggcagatctctgtactcacatgatgtttccttatccaatttgagcaaatagaagtagaaaga |
5902077 |
T |
|
| Q |
364 |
caaagaggtgacagaagcagggtagtaaacataggacaacaagttgaa |
411 |
Q |
| |
|
||||| |||| | | || |||| |||||||||||||||||| |||||| |
|
|
| T |
5902076 |
caaagtggtggctgcaggagggaagtaaacataggacaacatgttgaa |
5902029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 18189931 - 18189870
Alignment:
| Q |
294 |
taggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag |
355 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||||| ||||||||| |||||| |||| |
|
|
| T |
18189931 |
taggctctggtagatttctgtactcacatgttgtttcctcatccaacttaggcaaatagaag |
18189870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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