View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_low_14 (Length: 420)
Name: NF16634_low_14
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 6 - 405
Target Start/End: Original strand, 48799526 - 48799910
Alignment:
| Q |
6 |
aggagcacagaaccattaaataaaagaattacaatagcccttcattagagaannnnnnnnnagtaccgctatgtattttctaaagacatcttttcgacag |
105 |
Q |
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|||| |||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48799526 |
aggaccacaaaaccattaaataaaagaattacaattgcccttcattagagaatttttttttagtaccgctatgtattttctaaagacatcttttcgacag |
48799625 |
T |
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| Q |
106 |
acaatataaaaagaaacagtcataattaaataaaagtgacatcagaaagtcttttaatatggaggttagtctgcggtccaaaactccaaggtccaatcga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48799626 |
acaatataaaaagaaacagtcataattaaataaaagtgacatcagaaagtcttttaatatggaggttagtctgcggtc---------------caatcga |
48799710 |
T |
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| Q |
206 |
atcaatatgtttgaaggggtaactcattcccttcagagttgagggaatttagaggcagtgaaaatggcttaaaatttgttgtctttgttaactacagtac |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48799711 |
atcaatatgtttgaaggggtaactcattcccttcagagttgggggaatttagaggcagtgaaaatggcttaaaatttgttgtctttgttaactacagtac |
48799810 |
T |
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| Q |
306 |
ttcattccattttgttcaaactcaaaattggtgttacatgtattataaccaacaatcctttattactttcaagttacccaatatcagttttggaatttct |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48799811 |
ttcattccattttgttcaaactcaaaattggtgttacatgtattataaccaacaatcctttattactttcaagttacccaatatcagttttggaatttct |
48799910 |
T |
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