View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_low_17 (Length: 397)
Name: NF16634_low_17
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 5 - 370
Target Start/End: Complemental strand, 1606559 - 1606192
Alignment:
| Q |
5 |
aaatttatgtgtttgtttatcatttctgttaannnnnnn-acagagaatcgtgtacgtatttgatagtacatgttacgtaacaaaattgtatatgatatc |
103 |
Q |
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| T |
1606559 |
aaatttatgtgtttgtttatcatttctgttaaatttttttacagagaatcgtgtacgtatttgatagtacatgttacgtaacaaaattgtatatgatatc |
1606460 |
T |
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| Q |
104 |
tcacttattacgtaccgttccatgtatcctataaatgggaagctttactaatttggaggatatatagattcttgtttcaaatgggtttctttttcataac |
203 |
Q |
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| T |
1606459 |
ttacttattacgtaccgttccatgtatcctataaatgggaagctttactaatttggaggatatatagattcttgtttcaaatgggtttctttttcataat |
1606360 |
T |
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| Q |
204 |
gttgtcaccattgatgtcaacttttatatgctccataaattaacaaccaaaaagctttcataccaaatttcgaatcgca-nnnnnnnnnggtaggggtca |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
1606359 |
gttgtcaccattgatgtcaacttttatatgctccataaattaacaaccaaaaagctttcataccaaatttcgaatcgcattttttttttggtagaggtca |
1606260 |
T |
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| Q |
303 |
tcaaataagttacgtacgcatatactactaattaaacattcttagcttgttaaaaagaaatcattatt |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606259 |
tcaaataagttacgtacgcatatactactaattaaacattcttagcttgttaaaaagaaatcattatt |
1606192 |
T |
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