View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_low_19 (Length: 358)
Name: NF16634_low_19
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 3 - 338
Target Start/End: Complemental strand, 45465883 - 45465550
Alignment:
| Q |
3 |
gaacacaactgaatttattagtagtagtattatgtaatattaaaagttaagtcatgtcctcctgaatagtcggagaaacnnnnnnnttgagctagagcag |
102 |
Q |
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| T |
45465883 |
gaacacaactgaatttattagtagtagtattatgtaatattaaaagttaagtcatgtcctcctgaatagtc--agaaacaaaaaaattgagctagagcag |
45465786 |
T |
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| Q |
103 |
gcatacataaggatattcataatgctgaattttattgacttgaagaagctagtaactagagtacattggcatgtcaaaaagccctgcaaatgtaaccatt |
202 |
Q |
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| T |
45465785 |
gcatacataaggatattcataatgctgaattttattgacttgaagaagctagtaactagagtacattggcatgtcaaaaagccctgcaaatgtaaccact |
45465686 |
T |
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| Q |
203 |
aaaaccaaaattgcaggaccgtcaacatacagcaaaaacatcaaaagctgctcgaacttggttcgaattggtgattataaataagctatggttttgtaga |
302 |
Q |
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| T |
45465685 |
aaaaccaaaattgcaggaccgtcaacatacagcaaaaacatcaaaagctgctcgaacttggttcgaattggtgattataaataagctatggttttgtaga |
45465586 |
T |
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| Q |
303 |
ctatttgaattaaataggctaactctatggctatat |
338 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
45465585 |
ctatttgaattaaataggctaactctatggctatat |
45465550 |
T |
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