View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16634_low_2 (Length: 735)

Name: NF16634_low_2
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16634_low_2
NF16634_low_2
[»] chr4 (4 HSPs)
chr4 (11-462)||(43396843-43397292)
chr4 (524-716)||(43396589-43396781)
chr4 (146-199)||(27131678-27131731)
chr4 (146-209)||(7422153-7422216)
[»] chr5 (2 HSPs)
chr5 (353-418)||(32358539-32358605)
chr5 (148-194)||(18542218-18542264)
[»] chr6 (1 HSPs)
chr6 (146-199)||(2468478-2468531)
[»] chr1 (2 HSPs)
chr1 (145-218)||(36552252-36552325)
chr1 (152-193)||(2445459-2445500)
[»] chr8 (1 HSPs)
chr8 (158-199)||(18992471-18992512)
[»] chr7 (1 HSPs)
chr7 (336-436)||(31317819-31317920)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 462
Target Start/End: Complemental strand, 43397292 - 43396843
Alignment:
Q  11 gagatgaactaagaagtttgaaatagttcgataaa--------tgattcaaattccgactgttaacataacatactaaaatcctatatggcccctacact 102  Q
    |||||||||||||||||||||||||||||||||||        ||||||||||||||||| ||||||||||||||||||||||||||||| ||    |||    
T  43397292 gagatgaactaagaagtttgaaatagttcgataaagagatatatgattcaaattccgactattaacataacatactaaaatcctatatggtcc----act 43397197  T
Q  103 tcagattgaaaatatgttcgtgtctgacggaattggtgtacaacaacacatgtgattacattcaattactactattttcttaaat-gattactaatgttt 201  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  43397196 tcagattgaaaatatgttcgtgtccgacggaattggtgtacaacaacacatgtgattacattcaattactgctattttcttaaattgattactaatgttt 43397097  T
Q  202 atgtgtcattgtcgtatctgtgtcnnnnnnnctagagtaaagacacaatttagtctctcacaattttatcacggtctaatttaatccattacttnnnnnn 301  Q
    ||||||||||||       |||||       ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||          
T  43397096 atgtgtcattgt-------gtgtcaaaaaaactagagtaaagacacaatttagtctctcacaattttatcacggcctagtttaatccattacttaaaaaa 43397004  T
Q  302 ncattaaagtagtccttgatattttcaaactggagacaaattagtcctgaactcattataacagaggatttatttatcttcaatttgaaaatgtcaatga 401  Q
     |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  43397003 acattaaagtagtccttgatattttcaaactggggataaattagtcctgaactcattatacaagaggacttatttatcttcaatttgaaaatgtcaatga 43396904  T
Q  402 ctagtttggtattatttcttctcggagactaaattggtcccccaaattttatttatagaac 462  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43396903 ctagtttggtattatttcttctcggagactaaattggtccgccaaattttatttatagaac 43396843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 524 - 716
Target Start/End: Complemental strand, 43396781 - 43396589
Alignment:
Q  524 tgtgacctcatcagtgaagagcaatgaagtagcatcaagaccagcatgatgaaacaaccatgcagcttgcttaagcttacacatatcacttctcttcaca 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43396781 tgtgacctcatcagtgaagagcaatgaagtagcatcaagaccagcatgatgaaacaaccatgcagcttgcttaagcttacacatatcacttctcttcaca 43396682  T
Q  624 ttcatcacaggcaccaccactgtcctctcttttccaccaccatcattctctttctgtctataacccaatagccatgcatgacaaatagcagcc 716  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43396681 ttcatcacaggcaccaccactgtcctctcttttccaccaccatcattctctttctgtctataacccaatagccatgcatggcaaatagcagcc 43396589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 27131678 - 27131731
Alignment:
Q  146 caacacatgtgattacattcaattactactattttcttaaatgattactaatgt 199  Q
    ||||||||||| ||||||||||||||| | |||||||||||| ||||| |||||    
T  27131678 caacacatgtggttacattcaattacttccattttcttaaattattaccaatgt 27131731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 7422216 - 7422153
Alignment:
Q  146 caacacatgtgattacattcaattactactattttcttaaatgattactaatgtttatgtgtca 209  Q
    |||||||| | |||||||||||| ||| ||||||||| |||| ||||| ||||| |||||||||    
T  7422216 caacacatataattacattcaatcacttctattttctcaaattattacaaatgtctatgtgtca 7422153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 32358605 - 32358539
Alignment:
Q  353 ctcattataacagagg-atttatttatcttcaatttgaaaatgtcaatgactagtttggtattattt 418  Q
    |||||||||||||||| | |||||| ||  ||||||||||||||||| | |||||||||||||||||    
T  32358605 ctcattataacagagggacttatttgtccccaatttgaaaatgtcaagggctagtttggtattattt 32358539  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 18542218 - 18542264
Alignment:
Q  148 acacatgtgattacattcaattactactattttcttaaatgattact 194  Q
    |||||||||||||||||||||||||  |||||||| |||| ||||||    
T  18542218 acacatgtgattacattcaattacttgtattttctcaaattattact 18542264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 2468478 - 2468531
Alignment:
Q  146 caacacatgtgattacattcaattactactattttcttaaatgattactaatgt 199  Q
    ||||||||||| ||||||||||||||| | |||||||||||| ||||| |||||    
T  2468478 caacacatgtggttacattcaattacttccattttcttaaattattaccaatgt 2468531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 36552252 - 36552325
Alignment:
Q  145 acaacacatgtgattacattcaattactactattttcttaaatgattactaatgtttatgtgtcattgtcgtat 218  Q
    |||||||| |||||| ||||||| || | || |||| || |||||||||| |||| ||||||||||||||||||    
T  36552252 acaacacacgtgatttcattcaagtatttctgttttttttaatgattacttatgtctatgtgtcattgtcgtat 36552325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 2445459 - 2445500
Alignment:
Q  152 atgtgattacattcaattactactattttcttaaatgattac 193  Q
    ||||||||||||||||| ||| | ||||||||||||||||||    
T  2445459 atgtgattacattcaatcacttccattttcttaaatgattac 2445500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 18992471 - 18992512
Alignment:
Q  158 ttacattcaattactactattttcttaaatgattactaatgt 199  Q
    |||||||||||||||| |||||||| |||| |||||||||||    
T  18992471 ttacattcaattactattattttctaaaattattactaatgt 18992512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 436
Target Start/End: Complemental strand, 31317920 - 31317819
Alignment:
Q  336 gacaaattagtcctgaactcattataacaga-ggatttatttatcttcaatttgaaaatgtcaatgactagtttggtattatttcttctcggagactaaa 434  Q
    |||| ||||||||||  |||||||||||| | ||| | |||| ||  || ||| |||||||||  ||||||||||||||||||| || |||| |||||||    
T  31317920 gacagattagtcctggcctcattataacaaaaggactaatttgtccccatttttaaaatgtcagggactagtttggtattattttttgtcggggactaaa 31317821  T
Q  435 tt 436  Q
    ||    
T  31317820 tt 31317819  T

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