View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_low_20 (Length: 354)
Name: NF16634_low_20
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 33 - 344
Target Start/End: Complemental strand, 53601927 - 53601616
Alignment:
| Q |
33 |
tgtcaatgtcgtgttttataggttatgattatgagtaaaggtgaagattacctgccaacgatgccattaaccatgatgacaaggtgaggaggaatggggt |
132 |
Q |
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| T |
53601927 |
tgtcaatgtcgtgttttataggttatgattatgagtaaaggtgaagattacctgccaacgatgccattaaccatgatgacaaggtgaggaggaatagggt |
53601828 |
T |
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| Q |
133 |
tgttagcatcactattatcttctactttggggttgttcaaacaacttcctccaaatcgccgatgatgaaatttcattttgataatccaaaaagcgatgag |
232 |
Q |
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| T |
53601827 |
tgttagcatcactattatcttctactttggggttgttcaaacaacttcctccaaatcgccgatgatgaaatttcattttgataatccaaaaagcgatgag |
53601728 |
T |
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| Q |
233 |
aagagatccaaataataataatgatgatggcgtaaggttgaagttgaagcgaacaatcgcgataatgatcgcaaagctcagagcccaaaccagaaacgaa |
332 |
Q |
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| T |
53601727 |
aagagatccaaataataataatgatgatggcgtaaggttgaagttgaagcgaacaatcgcgataatgatcgcaaagctcagagcccaaaccagaaacgaa |
53601628 |
T |
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| Q |
333 |
ttcattcctttg |
344 |
Q |
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|||||||||||| |
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| T |
53601627 |
ttcattcctttg |
53601616 |
T |
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