View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_low_23 (Length: 334)
Name: NF16634_low_23
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_low_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 304
Target Start/End: Original strand, 32875016 - 32875310
Alignment:
| Q |
11 |
cagagagattagcaatggatgtataatgaaaccctctcaactagttaatcgtccaagggttaatgttggtggtgatgatctcaggactttctacacaatg |
110 |
Q |
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| T |
32875016 |
cagagagattagcaatggatgtataatgaaaccctctcaactagttaatcgtccaagggttaatgttggtggtgatgatctcaggactttctacacaatg |
32875115 |
T |
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| Q |
111 |
gtaagtatagttattaagaaatattttaaatgaaaa-aatgtgactctaagattgttaatgcttcaaaatatctttcattgccggcacaattgcataaat |
209 |
Q |
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| T |
32875116 |
gtaagtatagttattaagaaatattttaaatgaaaaaaatgtgactctaagattgttaatgcttcaaaatatctttcattgccggcacaattgcataaat |
32875215 |
T |
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| Q |
210 |
cataattttttcttatagtaaattttagttgtaattttgttagcaggaaaaattgatcacataacattctatcacttgaactttcaaacccacca |
304 |
Q |
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| T |
32875216 |
cataattttttcttatagtaaattttagttgtaattttgttagcaggaaaaattaatcacataacattctatcacttgaactttcaaacccacca |
32875310 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 43396648 - 43396616
Alignment:
| Q |
302 |
ccaccaccgtcattctctttctgtctataaccc |
334 |
Q |
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| T |
43396648 |
ccaccaccatcattctctttctgtctataaccc |
43396616 |
T |
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