View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16634_low_24 (Length: 333)

Name: NF16634_low_24
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16634_low_24
NF16634_low_24
[»] chr4 (10 HSPs)
chr4 (64-319)||(4747084-4747335)
chr4 (17-208)||(11913985-11914176)
chr4 (78-218)||(31767431-31767572)
chr4 (64-218)||(13250494-13250650)
chr4 (67-228)||(895426-895588)
chr4 (62-218)||(43287841-43287999)
chr4 (91-162)||(13010529-13010602)
chr4 (18-144)||(43472170-43472294)
chr4 (87-286)||(44643382-44643577)
chr4 (80-155)||(6667703-6667781)
[»] chr1 (10 HSPs)
chr1 (18-218)||(43254108-43254306)
chr1 (33-155)||(49387544-49387667)
chr1 (69-216)||(38825451-38825600)
chr1 (70-216)||(38828662-38828810)
chr1 (197-286)||(4242673-4242757)
chr1 (67-151)||(9111513-9111599)
chr1 (87-155)||(12141644-12141714)
chr1 (120-162)||(21501276-21501318)
chr1 (198-231)||(8040659-8040692)
chr1 (97-153)||(39197271-39197328)
[»] chr3 (7 HSPs)
chr3 (64-218)||(19930005-19930159)
chr3 (67-226)||(2353181-2353341)
chr3 (78-237)||(9372195-9372355)
chr3 (64-155)||(42253531-42253623)
chr3 (106-290)||(14654794-14654975)
chr3 (91-216)||(26445090-26445216)
chr3 (64-155)||(19935206-19935296)
[»] chr2 (7 HSPs)
chr2 (17-155)||(2590556-2590696)
chr2 (74-155)||(10941405-10941486)
chr2 (74-155)||(10947274-10947355)
chr2 (185-286)||(27107230-27107329)
chr2 (33-142)||(10938003-10938112)
chr2 (92-155)||(21189457-21189522)
chr2 (246-286)||(32424919-32424959)
[»] scaffold0933 (1 HSPs)
scaffold0933 (181-286)||(1132-1238)
[»] chr7 (8 HSPs)
chr7 (67-228)||(13815721-13815883)
chr7 (91-227)||(15569550-15569687)
chr7 (18-218)||(32352355-32352553)
chr7 (64-237)||(2609571-2609745)
chr7 (67-216)||(15169930-15170079)
chr7 (67-162)||(22301123-22301220)
chr7 (234-286)||(31206762-31206814)
chr7 (33-155)||(31210013-31210137)
[»] chr8 (4 HSPs)
chr8 (32-155)||(21185258-21185383)
chr8 (32-155)||(1788836-1788961)
chr8 (91-143)||(33940438-33940491)
chr8 (91-142)||(41739879-41739931)
[»] scaffold0076 (1 HSPs)
scaffold0076 (67-228)||(6732-6894)
[»] scaffold0002 (1 HSPs)
scaffold0002 (181-286)||(448648-448751)
[»] chr6 (7 HSPs)
chr6 (33-228)||(3835598-3835794)
chr6 (67-155)||(24044905-24044994)
chr6 (67-162)||(24041602-24041698)
chr6 (78-151)||(2936131-2936205)
chr6 (119-237)||(14579593-14579711)
chr6 (91-145)||(19973734-19973789)
chr6 (87-155)||(6591841-6591911)
[»] chr5 (2 HSPs)
chr5 (94-230)||(13291934-13292071)
chr5 (67-153)||(39292156-39292244)
[»] scaffold0807 (1 HSPs)
scaffold0807 (184-285)||(5390-5489)
[»] scaffold0216 (1 HSPs)
scaffold0216 (130-231)||(12093-12194)
[»] scaffold0028 (2 HSPs)
scaffold0028 (67-216)||(110116-110266)
scaffold0028 (92-216)||(127695-127820)
[»] scaffold0293 (1 HSPs)
scaffold0293 (62-162)||(4891-4993)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 64 - 319
Target Start/End: Complemental strand, 4747335 - 4747084
Alignment:
Q  64 atgacctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgtcttaaggatttatccgcctcataagcgtatatcctcctaagataa 163  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||   ||||||||||||||||||||| ||||||     
T  4747335 atgacctgcaaaacagtaaaccattaaataatctgaggcgtgacgaagtcactgtcttaaggattcatggacctcataagcgtatatcctcccaagatac 4747236  T
Q  164 aatagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaatctcataaacacatgaatgatgcacccatgaaacctaaacttgatttt 263  Q
    || || || ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4747235 aacaggttcttcgcttgtatgaatcatatca--ggtgacagaacaacttgaatctcataaacacatgaatgatgcacccatgaaacctaaagttgatttt 4747138  T
Q  264 ctaaggaagaggaaattaattttatgtagagaggtgatcagttctctgtaaaaagt 319  Q
    |||||  | |||||||||||||||||| |||||||||||||||||| |||||||||    
T  4747137 ctaag--aaaggaaattaattttatgtggagaggtgatcagttctccgtaaaaagt 4747084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 11913985 - 11914176
Alignment:
Q  17 tgaagtcggtaataatgaagtaaacaaacaagaagtcatgaacgctgatgacctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcacc 116  Q
    |||||||| |||  ||||||||||||||||| || ||||||||   |||||||| ||||| ||| |||| ||||||||||| ||||||||||||||||      
T  11913985 tgaagtcgataacgatgaagtaaacaaacaaaaaatcatgaacatcgatgacctacaaaatagtcaaccgttaaataacctaaggcgtgacgaagtcatt 11914084  T
Q  117 gt-cttaaggatttatccgcctcataagcgtatatcctcctaagataaaatagatttttcgcttgtatgaatcatatcagtggtgacagaaca 208  Q
     | |||||||||||||||| |||||||| | ||||||||| || ||| || ||||| ||| |  ||||||||||||  || ||||||||||||    
T  11914085 atccttaaggatttatccgtctcataagtgcatatcctcccaa-atacaacagattcttctccggtatgaatcatactagaggtgacagaaca 11914176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 78 - 218
Target Start/End: Original strand, 31767431 - 31767572
Alignment:
Q  78 agtaaaccattaaataacctgaggcgtgacgaagtcaccgtc-ttaaggatttatccgcctcataagcgtatatcctcctaagataaaatagatttttcg 176  Q
    |||||||| |||| |||| ||||||||||| || ||||  || |||||||||||||||||||||||||  ||||||||||| |||| || |  || |||     
T  31767431 agtaaaccgttaactaacatgaggcgtgacaaaatcactatccttaaggatttatccgcctcataagcacatatcctcctaggatacaacatgttcttcc 31767530  T
Q  177 cttgtatgaatcatatcagtggtgacagaacaacttgaatct 218  Q
    ||  ||||||||| ||||| ||||||||||||||||||||||    
T  31767531 ctgatatgaatcacatcagaggtgacagaacaacttgaatct 31767572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 13250494 - 13250650
Alignment:
Q  64 atgacctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgtc-ttaaggatttatccgcctcataagcgtatatcctcctaag-at 161  Q
    ||||||||||||| ||||| || ||| ||||| ||||||||||| |||||||  || |||| ||||||||| ||||||||||| ||||||| || || ||    
T  13250494 atgacctgcaaaatagtaagccgttatataacatgaggcgtgacaaagtcactctccttaaagatttatccacctcataagcgcatatccttcttaggat 13250593  T
Q  162 aaaatagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaatct 218  Q
    | ||||  || ||| ||  ||||||||| |||||||||||||||||| |||||||||    
T  13250594 acaatatgttcttccctgatatgaatcacatcagtggtgacagaacagcttgaatct 13250650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 228
Target Start/End: Complemental strand, 895588 - 895426
Alignment:
Q  67 acctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgtc-ttaaggattt-atccgcctcataagcgtatatcctcctaagataaa 164  Q
    |||||||||| |||||||  |||  ||||||||| ||||||  |||||| ||| || ||||||| |||||||||||||||| ||||||||| | |||| |    
T  895588 acctgcaaaatagtaaactgttatctaacctgagtcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggataca 895489  T
Q  165 atagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaatctcataaacaca 228  Q
    | || || ||| ||  ||||||||||||||| ||||| ||||||| |||||| | |||||||||    
T  895488 aaag-ttcttccctaatatgaatcatatcagaggtgatagaacaagttgaatttaataaacaca 895426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 43287999 - 43287841
Alignment:
Q  62 tgatgacctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgtc--ttaaggatttatccgcctcataagcgtatatcctcctaag 159  Q
    ||||||| |||| || |||||||| || |||||| ||||||||||| ||||||| |||  | |||||||||| ||||||||||||| ||||| | | | |    
T  43287999 tgatgacatgcacaatagtaaaccgttgaataacatgaggcgtgacaaagtcactgtccttaaaggatttattcgcctcataagcgcatatctttccagg 43287900  T
Q  160 ataaaatagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaatct 218  Q
    ||| || | ||| ||| |   ||||||||| ||||| |||||||||||| |||||||||    
T  43287899 atacaacatattcttctcagatatgaatcacatcagaggtgacagaacagcttgaatct 43287841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 13010529 - 13010602
Alignment:
Q  91 ataacctgaggcgtgacgaagtcaccgtc-ttaaggattt-atccgcctcataagcgtatatcctcctaagata 162  Q
    |||||||||||||||||  |||||| ||| || ||||||| |||||||||||||||| ||||||||||| ||||    
T  13010529 ataacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcctaggata 13010602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 43472294 - 43472170
Alignment:
Q  18 gaagtcggtaataatgaagtaaacaaacaagaagtcatgaacgctgatgacctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccg 117  Q
    ||||||||||||  |||| |||||||| |||   |||| |||| |||||||||||| |  |||||||| || |||||| ||||| ||||| || |||| |    
T  43472294 gaagtcggtaatgttgaaataaacaaataag---tcattaacggtgatgacctgcacagtagtaaaccgttgaataacatgaggtgtgacaaaatcactg 43472198  T
Q  118 t-cttaaggatttatccgcctcataagc 144  Q
    | |||| |||||||| ||||||||||||    
T  43472197 tccttagggatttattcgcctcataagc 43472170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 286
Target Start/End: Complemental strand, 44643577 - 44643382
Alignment:
Q  87 ttaaataacctgaggcgtgacgaagtcaccgtcttaaggatt-tatccgcctcataagcgtatatcctcctaagataaaatagatttttcgcttgtatga 185  Q
    |||| ||||||||||||||||  |||||| ||| |   |||| ||||||||||||||||| ||||||||||| |||| || || || ||| |   |||||    
T  44643577 ttaagtaacctgaggcgtgacatagtcactgtccttcagattctatccgcctcataagcgcatatcctcctaggatacaacag-ttcttccccgatatga 44643479  T
Q  186 atcatatc-agtggtgacagaacaacttgaatctcataaacacatgaatgatgcacccatgaaacctaaacttgattttctaaggaagaggaaattaatt 284  Q
    |||||| | || | ||||||||||||| ||||   ||| ||||| ||  ||| |||| |  |||||||||||||||||| |||| || ||||||||||||    
T  44643478 atcataaccagagatgacagaacaactcgaat---atatacacagga--gattcaccaaaaaaacctaaacttgattttataagaaaaaggaaattaatt 44643384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 6667703 - 6667781
Alignment:
Q  80 taaaccattaaataa-cctgaggcgtgacgaagtcaccgt-cttaaggattt-atccgcctcataagcgtatatcctcc 155  Q
    |||||||||| |||| |||||||||||||  |||||| || ||| ||||||| |||||||||||||||| |||||||||    
T  6667703 taaaccattacataaacctgaggcgtgacatagtcactgttcttgaggattttatccgcctcataagcgcatatcctcc 6667781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 43254306 - 43254108
Alignment:
Q  18 gaagtcggtaataatgaagtaaacaaacaagaagtcatgaacgctgatgacctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccg 117  Q
    ||||||||||||  |||| ||||||||||||   |||| |||| ||||||||| || |  |||||||| || |||||| ||||||||||| ||||||| |    
T  43254306 gaagtcggtaatgttgaaataaacaaacaag---tcattaacggtgatgacctacacagtagtaaaccgttgaataacatgaggcgtgacaaagtcactg 43254210  T
Q  118 tc-ttaaggatttatccgcctcataagcgtatatcctcctaagataaaatagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaat 216  Q
    || |||||||||||| ||||||||||||| ||||||||| | |||| || |  || ||| | | ||||||||||||||| ||||||||||||||||||||    
T  43254209 tccttaaggatttattcgcctcataagcgcatatcctcccaggatacaacatgttcttcccatatatgaatcatatcagaggtgacagaacaacttgaat 43254110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 155
Target Start/End: Original strand, 49387544 - 49387667
Alignment:
Q  33 gaagtaaacaaacaagaagtcatgaacgctgatgacctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcac-cgtcttaaggatttat 131  Q
    ||||||||||| || |||  |||||| |  ||| |||||| ||||||||| |||||| ||||| ||||||||||| |||||||  | |||||||||||||    
T  49387544 gaagtaaacaatcaggaaaccatgaaaggagataacctgccaaacagtaatccattatataacatgaggcgtgacaaagtcactggccttaaggatttat 49387643  T
Q  132 ccgcctcataagcgtatatcctcc 155  Q
     ||||| ||||||| |||||||||    
T  49387644 tcgccttataagcgcatatcctcc 49387667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 216
Target Start/End: Original strand, 38825451 - 38825600
Alignment:
Q  69 ctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgtc-ttaaggattt-atccgcctcataagcgtatatcctcctaagataaaat 166  Q
    |||||||| ||||| |||||| ||| | ||||| ||||||||||||| ||| |||||||||| |||| |||||||| || ||||||||| | |||| ||     
T  38825451 ctgcaaaatagtaagccattacatagcttgaggtgtgacgaagtcactgtccttaaggattttatcctcctcataaacgcatatcctcccaggatacaac 38825550  T
Q  167 agatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaat 216  Q
    |  || ||| ||  ||||||||||||||  |||| |||||||||||||||    
T  38825551 aagttcttctctgctatgaatcatatcaaaggtggcagaacaacttgaat 38825600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 216
Target Start/End: Original strand, 38828662 - 38828810
Alignment:
Q  70 tgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgt-cttaagga-tttatccgcctcataagcgtatatcctcctaagataaaata 167  Q
    ||||||| ||||| || ||| ||||| |||||||||||||||||||  | |||||||| ||||||||||| ||||||  ||||| ||| | ||||||| |    
T  38828662 tgcaaaatagtaagccgttacataacttgaggcgtgacgaagtcactatccttaaggattttatccgccttataagctcatatcttcccaggataaaaca 38828761  T
Q  168 gatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaat 216  Q
      || ||| ||  ||||||||||||||| | || |||||||||||||||    
T  38828762 agttcttccctactatgaatcatatcagagttggcagaacaacttgaat 38828810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 4242673 - 4242757
Alignment:
Q  197 ggtgacagaacaacttgaatctcataaacacatgaatgatgcacccatgaaacctaaacttgattttctaaggaagaggaaattaatttt 286  Q
    ||||||||||||||| ||||   ||||||||| ||  |||||||||| |||||||| |||||||||| || | || ||||||||||||||    
T  4242673 ggtgacagaacaactcgaat---ataaacacagga--gatgcacccaggaaacctagacttgattttatatgaaaaaggaaattaatttt 4242757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 9111513 - 9111599
Alignment:
Q  67 acctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgt-cttaagga-tttatccgcctcataagcgtatatc 151  Q
    |||||||||| |||||||  ||| |||| ||||||||||||  |||||| || ||| |||| ||||||||||||||||||| |||||    
T  9111513 acctgcaaaatagtaaactgttatataatctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatc 9111599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 12141644 - 12141714
Alignment:
Q  87 ttaaataacctgaggcgtgacgaagtcaccgtc-ttaaggattt-atccgcctcataagcgtatatcctcc 155  Q
    |||| ||||||||||||||||  |||||| ||| || ||||||| |||||||||||||||| |||||||||    
T  12141644 ttaagtaacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 12141714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 21501276 - 21501318
Alignment:
Q  120 ttaaggatttatccgcctcataagcgtatatcctcctaagata 162  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||    
T  21501276 ttaaggatttatccgtctcataagtgtatatcctcctaggata 21501318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 8040692 - 8040659
Alignment:
Q  198 gtgacagaacaacttgaatctcataaacacatga 231  Q
    ||||||||||||||||||||| ||||||||||||    
T  8040692 gtgacagaacaacttgaatctaataaacacatga 8040659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 39197328 - 39197271
Alignment:
Q  97 tgaggcgtgacgaagtcaccgtctt-aaggatttatccgcctcataagcgtatatcct 153  Q
    ||||||||||||||||| | || || ||||||||||| |||||||||||| |||||||    
T  39197328 tgaggcgtgacgaagtcgctgtatttaaggatttatctgcctcataagcgcatatcct 39197271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 19930005 - 19930159
Alignment:
Q  64 atgacctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgt-cttaaggatttatccgcctcataagcgtatatcctcctaagata 162  Q
    ||||||||||||| |||||||| ||| ||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||  |||||    
T  19930005 atgacctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcaccgtccttaaggatttatccgcctcataagcgcatatcctcc-cagata 19930103  T
Q  163 aaatagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaatct 218  Q
     || |  || ||| ||   |||||||| ||||| ||||| ||||||||||||||||    
T  19930104 caacatgttcttccctgagatgaatcacatcagaggtgatagaacaacttgaatct 19930159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 67 - 226
Target Start/End: Complemental strand, 2353341 - 2353181
Alignment:
Q  67 acctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgtc-ttaaggatttatccgcctcataagcgtatatcctcctaagataaaa 165  Q
    |||||||||| | |||||| ||| |||||||||||| ||| |||||||  ||| |||||||||||||||||||||||| |  |||||||| | |||| ||    
T  2353341 acctgcaaaataataaaccgttatataacctgaggcatgatgaagtcattgtccttaaggatttatccgcctcataagtgcttatcctcccaggatacaa 2353242  T
Q  166 tagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaatctcataaaca 226  Q
     || || ||| ||  |||||||||||| || |||||||||||||||||||| | |||||||    
T  2353241 caggttcttctctgatatgaatcatataagaggtgacagaacaacttgaatttgataaaca 2353181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 78 - 237
Target Start/End: Original strand, 9372195 - 9372355
Alignment:
Q  78 agtaaaccattaaataacctgaggcgtgacgaagtcaccgt-cttaaggatttatccgcctcataagcgtatatcctcctaagataaaatagatttttcg 176  Q
    |||||||| |||||||||||||||| |||||||||||| || ||||||||||||| ||||||||||||| ||||| ||| | |||| || || ||  ||     
T  9372195 agtaaaccgttaaataacctgaggcatgacgaagtcactgtccttaaggatttattcgcctcataagcgcatatcgtcccaggatacaacaggttcatcc 9372294  T
Q  177 cttgtatgaatcatatcagtggtgacagaacaacttgaatctcataaacacatgaatgatg 237  Q
    ||  |||||||||||| || ||||||| | |||||| ||| | |||||||||||| |||||    
T  9372295 ctgatatgaatcatatgagaggtgacaaagcaacttaaatttgataaacacatgactgatg 9372355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 42253531 - 42253623
Alignment:
Q  64 atgacctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgt-cttaaggatttatccgcctcataagcgtatatcctcc 155  Q
    ||||||||||||| |||||||| ||| ||||| ||||||||||| ||||||| || |||||||||||| |||||||||||||| |||||||||    
T  42253531 atgacctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcactgtccttaaggatttacccgcctcataagcgcatatcctcc 42253623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 290
Target Start/End: Complemental strand, 14654975 - 14654794
Alignment:
Q  106 acgaagtcaccgtcttaaggatttatccgcctcataagcgtatatcctcctaagataaaatagatttttcgcttgtatgaatcatatcagtggtgacaga 205  Q
    |||||||||| |||||||||||||||||||| ||||| || ||||  ||  | |||| || || || ||| ||   ||||||||| |||| |||||||||    
T  14654975 acgaagtcactgtcttaaggatttatccgccacataaacgcatatt-tc--aggatacaacaggttcttctctgacatgaatcatgtcagaggtgacaga 14654879  T
Q  206 acaacttgaatctcataaacacatgaatgatg-cacccatgaaacctaaacttgattttctaaggaagaggaaattaattttatgt 290  Q
    ||||||||||  | |||| |||| ||| ||||  ||||| ||||| ||||||| ||||||||||||| |||||||||| |||||||    
T  14654878 acaacttgaagttgataatcacaggaaagatgtaacccaagaaacgtaaactt-attttctaaggaataggaaattaactttatgt 14654794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 26445090 - 26445216
Alignment:
Q  91 ataacctgaggcgtgacgaagtcaccgtc-ttaaggatttatccgcctcataagcgtatatcctcctaagataaaatagatttttcgcttgtatgaatca 189  Q
    ||||| |||||| |||| ||||||| ||| ||||||||||||||||||||||| ||||||||||   |||||| || |  || ||| ||  |||||||||    
T  26445090 ataacatgaggcatgacaaagtcactgtccttaaggatttatccgcctcataatcgtatatcctgtcaagatacaacatgttcttccctgatatgaatca 26445189  T
Q  190 tatcagtggtgacagaacaacttgaat 216  Q
    |||||| || |||| ||||| ||||||    
T  26445190 tatcagaggcgacataacaatttgaat 26445216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 19935206 - 19935296
Alignment:
Q  64 atgacctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgtc-ttaaggatttatccgcctcataagcgtatatcctcc 155  Q
    ||||| ||||||| |||||||| |||  |||  ||||||||||| ||||||| ||| |||||||||||||| ||||||||||| |||| ||||    
T  19935206 atgacgtgcaaaatagtaaaccgtta--taatatgaggcgtgacaaagtcactgtccttaaggatttatcctcctcataagcgcatattctcc 19935296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 2590696 - 2590556
Alignment:
Q  17 tgaagtcggtaataatgaagtaaacaaacaagaagtcatgaacgctgatgacctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcacc 116  Q
    ||||| |||||||  |||||||||||||||||||||||||||||  |||||||||||| |  ||||||| || ||||||||||||||||||  ||||||     
T  2590696 tgaagccggtaatggtgaagtaaacaaacaagaagtcatgaacggagatgacctgcaacatggtaaaccgttcaataacctgaggcgtgacatagtcact 2590597  T
Q  117 gt-cttaagga-tttatccgcctcataagcgtatatcctcc 155  Q
    || ||| |||| ||||| ||||||||||||| |||||||||    
T  2590596 gtccttgaggattttattcgcctcataagcgcatatcctcc 2590556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 10941405 - 10941486
Alignment:
Q  74 aaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgtc-ttaaggatttatccgcctcataagcgtatatcctcc 155  Q
    ||||||||| |||||| ||||| ||||||||||| ||||||| ||| |||||||||||| ||||||||||||| |||||||||    
T  10941405 aaacagtaatccattatataacatgaggcgtgac-aagtcactgtccttaaggatttattcgcctcataagcgcatatcctcc 10941486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 10947274 - 10947355
Alignment:
Q  74 aaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgtc-ttaaggatttatccgcctcataagcgtatatcctcc 155  Q
    ||||||||| |||||| ||||| ||||||||||| ||||||| ||| |||||||||||| ||||||||||||| |||||||||    
T  10947274 aaacagtaatccattatataacatgaggcgtgac-aagtcactgtccttaaggatttattcgcctcataagcgcatatcctcc 10947355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 27107329 - 27107230
Alignment:
Q  185 aatcatatcagtggtgacagaacaacttgaatctcataaacacatgaatgatgcacccatgaaacctaaacttgattttctaaggaagaggaaattaatt 284  Q
    ||||| ||||| |||||||||||| ||||||||| ||||||||| ||  ||||||||||  ||||||| || ||| ||| |||| || ||||||||||||    
T  27107329 aatcacatcagaggtgacagaacagcttgaatctgataaacacagga--gatgcacccagaaaacctagacatgaatttataagaaaaaggaaattaatt 27107232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 10938003 - 10938112
Alignment:
Q  33 gaagtaaacaaacaagaagtcatgaacgctgatgacctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgt-cttaaggatttat 131  Q
    ||||||||||| || ||| ||||||| |  ||  |||||| || |||||| |||||| ||||| ||||||||||| ||||||| || |||||||||||||    
T  10938003 gaagtaaacaatcaggaaatcatgaaaggagacaacctgccaaccagtaatccattatataacatgaggcgtgac-aagtcactgtccttaaggatttat 10938101  T
Q  132 ccgcctcataa 142  Q
     ||||||||||    
T  10938102 tcgcctcataa 10938112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 21189522 - 21189457
Alignment:
Q  92 taacctgaggcgtgacgaagtcaccgtc-ttaaggattt-atccgcctcataagcgtatatcctcc 155  Q
    ||||||||||||||||  |||||| ||| || ||||||| |||||||||||||||| |||||||||    
T  21189522 taacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 21189457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 32424959 - 32424919
Alignment:
Q  246 aaacctaaacttgattttctaaggaagaggaaattaatttt 286  Q
    |||||||||||||||||| |||| || ||||||||||||||    
T  32424959 aaacctaaacttgattttataagaaaaaggaaattaatttt 32424919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 1132 - 1238
Alignment:
Q  181 tatgaatcatatcagtggtgacagaacaacttgaatctcataaa-cacatgaatgatgcacccatgaaacctaaacttgattttctaaggaagaggaaat 279  Q
    ||||||||| |||||  | |||||| |||||||||||| ||||| |||| ||||||||||||||  ||||||||||||||||||||||||||| ||||||    
T  1132 tatgaatcacatcagatgcgacagagcaacttgaatctgataaaacacaggaatgatgcacccaataaacctaaacttgattttctaaggaagtggaaat 1231  T
Q  280 taatttt 286  Q
    |||||||    
T  1232 taatttt 1238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 67 - 228
Target Start/End: Complemental strand, 13815883 - 13815721
Alignment:
Q  67 acctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgt-cttaaggatttatccgcctcataagcgtatatcctcctaagataaaa 165  Q
    |||||| ||||||||| |||||| ||||| ||||||||||| ||||||| || ||||||||||||| ||||||||||||| ||||| ||| | |||| ||    
T  13815883 acctgccaaacagtaatccattatataacatgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataagcgcatatcttcccaggatacaa 13815784  T
Q  166 tagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaatctcataaacaca 228  Q
     |  || ||| ||  | ||||||| ||||| |||||||||||| ||||||||| |||||||||    
T  13815783 catgttcttccctaatgtgaatcacatcagaggtgacagaacagcttgaatctgataaacaca 13815721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 15569687 - 15569550
Alignment:
Q  91 ataacctgaggcgtgacgaagtcaccgtc-ttaaggatttatccgcctcataagcgtatatcctcctaagataaaatagatttttcgcttgtatgaatca 189  Q
    ||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||  ||||||||| | |||| || || || ||| ||  |||||||||    
T  15569687 ataacctgaggcgtgacaaagtcactgtccttagggatttatccgcctcataagcacatatcctcccaggatacaacaggttcttctctgatatgaatca 15569588  T
Q  190 tatcagtggtgacagaacaacttgaatctcataaacac 227  Q
    |||||| ||||||||||||||| ||||||  |||||||    
T  15569587 tatcagaggtgacagaacaactcgaatctgttaaacac 15569550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 32352355 - 32352553
Alignment:
Q  18 gaagtcggtaataatgaagtaaacaaacaagaagtcatgaacgctgatgacctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccg 117  Q
    ||||||||||||  |||| ||||||||||||   |||| |||| |||||||||||| |  |||||||| || ||||||  |||||||||| ||||||| |    
T  32352355 gaagtcggtaatgttgaaataaacaaacaag---tcattaacgatgatgacctgcacactagtaaaccgttgaataacacgaggcgtgacaaagtcactg 32352451  T
Q  118 tc-ttaaggatttatccgcctcataagcgtatatcctcctaagataaaatagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaat 216  Q
    || |||||||||||| ||||||||||||| ||||||||| | || | || | ||| ||| |   ||||||||| ||||| |||||||||||| ||| |||    
T  32352452 tccttaaggatttattcgcctcataagcgcatatcctcccaggacacaacatattcttctcagatatgaatcacatcagaggtgacagaacagcttaaat 32352551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 237
Target Start/End: Original strand, 2609571 - 2609745
Alignment:
Q  64 atgacctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgt-cttaaggatttatccgcctcataagcgtatatcctcctaagata 162  Q
    ||||||||||||| ||||| || ||| |||||||||||||||||||||||||  | |||||| ||||||| | |||||||||| ||||||||  | ||||    
T  2609571 atgacctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtatttatctgtctcataagcgcatatcctcgcaggata 2609670  T
Q  163 aaatagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaatctcataaacacatgaatgatg 237  Q
     || |  || ||| ||  |||||||||||||||  |||||||||||||| |||| |  |||||||  ||||||||    
T  2609671 caacatgttcttctctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacacgggaatgatg 2609745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 15170079 - 15169930
Alignment:
Q  67 acctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgt-cttaaggatttatccgcctcataagcgtatatcctcctaagataaaa 165  Q
    |||||||||||||||||| ||||||||||||||| ||||| |||||||| || |||||  ||||||| ||||||||| || ||||||||  | |||| ||    
T  15170079 acctgcaaaacagtaaac-attaaataacctgagacgtgatgaagtcactgtccttaaaaatttatcagcctcataaacgcatatcctcacaggatacaa 15169981  T
Q  166 tagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaat 216  Q
     || || ||| ||   ||||||||| |||| | ||||||||||||||||||    
T  15169980 caggttcttctctaacatgaatcatgtcagagatgacagaacaacttgaat 15169930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 22301123 - 22301220
Alignment:
Q  67 acctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgtc-ttaaggattt-atccgcctcataagcgtatatcctcctaagata 162  Q
    ||||||||||||  | || ||||  ||||||||||||||||  |||||| ||| || ||||||| |||||||||||||||| ||||||||| ||||||    
T  22301123 acctgcaaaacaaaatactattatgtaacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaagata 22301220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 31206762 - 31206814
Alignment:
Q  234 gatgcacccatgaaacctaaacttgattttctaaggaagaggaaattaatttt 286  Q
    ||||||||||  |||||||||||||||||| |||| || ||||||||||||||    
T  31206762 gatgcacccagaaaacctaaacttgattttataagaaaaaggaaattaatttt 31206814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 155
Target Start/End: Original strand, 31210013 - 31210137
Alignment:
Q  33 gaagtaaacaaacaagaagtcatgaacgctgatgacctgcaaaacagtaaaccattaaataa-cctgaggcgtgacgaagtcaccgtc-ttaaggattt- 129  Q
    ||||||||||||||  ||  |||||| | |||| |||||| ||  |||||||||||| |||| |||||||||||||  |||||| ||| || |||||||     
T  31210013 gaagtaaacaaacacaaaaccatgaaag-tgataacctgccaagaagtaaaccattacataaacctgaggcgtgacatagtcactgtccttgaggatttt 31210111  T
Q  130 atccgcctcataagcgtatatcctcc 155  Q
    |||||||||||||| | |||||||||    
T  31210112 atccgcctcataagtgcatatcctcc 31210137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 155
Target Start/End: Original strand, 21185258 - 21185383
Alignment:
Q  32 tgaagtaaacaaacaagaagtcatgaacgctgatgacctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgt-cttaagga-ttt 129  Q
    |||||||||||||||||||||||||||||  |||||||||||| |  ||||||| || |||||||||| |||||||  |||||| || ||| |||| |||    
T  21185258 tgaagtaaacaaacaagaagtcatgaacggagatgacctgcaacatggtaaaccgttcaataacctgaagcgtgacatagtcactgtccttgaggatttt 21185357  T
Q  130 atccgcctcataagcgtatatcctcc 155  Q
    |||||||||||||||| |||||||||    
T  21185358 atccgcctcataagcgcatatcctcc 21185383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 155
Target Start/End: Original strand, 1788836 - 1788961
Alignment:
Q  32 tgaagtaaacaaacaagaagtcatgaacgctgatgacctgcaaaacagtaaaccattaaataa-cctgaggcgtgacgaagtcaccgtc-ttaaggattt 129  Q
    ||||||||||||||| |||  |||||| | |||| |||||| ||| |||||||||||| |||| |||||||||||||  |||||| ||| || |||||||    
T  1788836 tgaagtaaacaaacacgaaaccatgaaag-tgataacctgccaaaaagtaaaccattacataaacctgaggcgtgacatagtcactgtccttgaggattt 1788934  T
Q  130 -atccgcctcataagcgtatatcctcc 155  Q
     |||||||||||||||| |||||||||    
T  1788935 tatccgcctcataagcgcatatcctcc 1788961  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 33940438 - 33940491
Alignment:
Q  91 ataacctgaggcgtgacgaagtcaccgt-cttaaggatttatccgcctcataag 143  Q
    |||||||||||| |||||||||||| || |||||||||||||||| ||||||||    
T  33940438 ataacctgaggcttgacgaagtcactgtccttaaggatttatccgtctcataag 33940491  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 41739879 - 41739931
Alignment:
Q  91 ataacctgaggcgtgacgaagtcaccgt-cttaaggatttatccgcctcataa 142  Q
    |||||||||||||||| ||||||||  | |||||||||||||||| |||||||    
T  41739879 ataacctgaggcgtgatgaagtcactatccttaaggatttatccgtctcataa 41739931  T

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Target: scaffold0076 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 67 - 228
Target Start/End: Original strand, 6732 - 6894
Alignment:
Q  67 acctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgtc-ttaaggattt-atccgcctcataagcgtatatcctcctaagataaa 164  Q
    |||||||||||| ||||||||||  ||| ||||||||||||  |||||| ||| || ||||||| |||||||||||||| | ||||||| | | |||| |    
T  6732 acctgcaaaacaataaaccattatctaaactgaggcgtgacatagtcactgtcattgaggattttatccgcctcataagtgcatatccttccatgataca 6831  T
Q  165 atagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaatctcataaacaca 228  Q
    | || |||||| ||  ||||||||||||||| | |||||||||||||||||| | |||||||||    
T  6832 acag-tttttccctgatatgaatcatatcagagatgacagaacaacttgaatttgataaacaca 6894  T

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Target: scaffold0002 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 448751 - 448648
Alignment:
Q  181 tatgaatcatatcagtggtgacagaacaacttgaatctcataaacacatgaatgatgcacccatgaaacctaaacttgattttctaaggaagaggaaatt 280  Q
    ||||||||||||||  ||||||| |||||||||||||| ||||||||| ||  |||||| ||| ||| | ||| |||||||||||||||||||||||| |    
T  448751 tatgaatcatatcaaaggtgacaaaacaacttgaatctgataaacacagga--gatgcaaccaggaagcataaccttgattttctaaggaagaggaaaat 448654  T
Q  281 aatttt 286  Q
    ||||||    
T  448653 aatttt 448648  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 228
Target Start/End: Original strand, 3835598 - 3835794
Alignment:
Q  33 gaagtaaacaaacaagaagtcatgaacgctgatgacctgcaaaacagtaaaccattaaataacc-tgaggcgtgacgaagtcaccgtc-ttaaggattta 130  Q
    |||||||||||||| |||  |||||  | |||| ||||||||||||||||||||||  |||| | ||||| ||||  |  |||||||| |||||||||||    
T  3835598 gaagtaaacaaacacgaaaccatgagag-tgataacctgcaaaacagtaaaccattgcataaacatgaggtgtgataagatcaccgtccttaaggattta 3835696  T
Q  131 tccgcctcataagcgtatatcctcctaagataaaatagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaatctcataaacaca 228  Q
    | | ||||||||||| ||||||||  | |||| || | ||| ||| ||  ||| ||||||||||| |||||||||||||||||||| | |||||||||    
T  3835697 ttcacctcataagcgcatatcctctcaggatacaacaaattcttctctgatataaatcatatcagaggtgacagaacaacttgaatttgataaacaca 3835794  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 24044905 - 24044994
Alignment:
Q  67 acctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgt-cttaaggatttatccgcctcataagcgtatatcctcc 155  Q
    |||||| ||||||||| |||||| ||||| ||||||||||| ||||||| || ||||||||||||| ||||||||||||| |||||||||    
T  24044905 acctgccaaacagtaatccattatataacatgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataagcgcatatcctcc 24044994  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 24041602 - 24041698
Alignment:
Q  67 acctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgtctt-aaggatttatccgcctcataagcgtatatcctcctaagata 162  Q
    |||||| ||||||||| |||||| ||||| | ||||||||| ||||||| ||||| ||| |||||| ||||||||||||| ||||||||||| ||||    
T  24041602 acctgccaaacagtaatccattatataacataaggcgtgacaaagtcactgtctttaagaatttattcgcctcataagcgcatatcctcctaggata 24041698  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 2936131 - 2936205
Alignment:
Q  78 agtaaaccattaaataacctgaggcgtgacgaagtcaccgtc-ttaaggatttatccgcctcataagcgtatatc 151  Q
    |||||||| ||| ||||| ||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||    
T  2936131 agtaaaccgttatataacatgaggtgtgacgaagtcactgtccttaaggatttatccgcctcataagcgcatatc 2936205  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 14579711 - 14579593
Alignment:
Q  119 cttaaggatttatccgcctcataagcgtatatcctcctaagataaaatagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaatct 218  Q
    ||||||||||||||||||||||||||| ||||||||  | |||| || || || ||| ||   ||||||||| | || |||||||||||||||||||| |    
T  14579711 cttaaggatttatccgcctcataagcgaatatcctctcaggatacaacaggttcttctctgacatgaatcatgtaagaggtgacagaacaacttgaattt 14579612  T
Q  219 cataaacacatgaatgatg 237  Q
     |||| || | ||||||||    
T  14579611 gataatcagaggaatgatg 14579593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 19973789 - 19973734
Alignment:
Q  91 ataacctgaggcgtgacgaagtcaccgtc-ttaaggatttatccgcctcataagcg 145  Q
    ||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||    
T  19973789 ataacctgaggcgtgacaaagtcactgtccttaaagatttatccgcctcataagcg 19973734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 6591841 - 6591911
Alignment:
Q  87 ttaaataacctgaggcgtgacgaagtcaccgtc-ttaaggattt-atccgcctcataagcgtatatcctcc 155  Q
    |||| ||||||||||||||||| |||||| ||| || ||||||| |||||||||||||||| |||||||||    
T  6591841 ttaagtaacctgaggcgtgacgtagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 6591911  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 230
Target Start/End: Complemental strand, 13292071 - 13291934
Alignment:
Q  94 acctgaggcgtgacgaagtcaccgtc-ttaaggatttatccgcctcataagcgtatatcctcctaagataaaatagatttttcgcttgtatgaatcatat 192  Q
    ||||||||| ||||||||| || ||| |||| ||||||||||||||||||||| ||||||||| | |||| || || || ||| ||  ||||||||||||    
T  13292071 acctgaggcatgacgaagttactgtccttaaagatttatccgcctcataagcgcatatcctcccaggatacaacaggttattctctgatatgaatcatat 13291972  T
Q  193 cagtggtgacagaacaacttgaatctcataaacacatg 230  Q
    ||| ||||| ||||||||| |||| | ||||| |||||    
T  13291971 cagaggtgatagaacaactcgaatttgataaatacatg 13291934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 39292244 - 39292156
Alignment:
Q  67 acctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgt-cttaagga-tttatccgcctcataagcgtatatcct 153  Q
    |||||||||||| ||||||||||  |||||||||| ||||   |||||| || |||||||| ||||||||||||||||||| |||||||    
T  39292244 acctgcaaaacaataaaccattatctaacctgaggtgtgatatagtcactgtccttaaggattttatccgcctcataagcgcatatcct 39292156  T

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Target: scaffold0807 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 285
Target Start/End: Original strand, 5390 - 5489
Alignment:
Q  184 gaatcatatcagtggtgacagaacaacttgaatctcataaacacatgaatgatgcacccatgaaacctaaacttgattttctaaggaagaggaaattaat 283  Q
    ||||||||| || ||||||| |||||||||||| | ||||||||||||  |||||||||| |||| |||||||| |||||||||  || || ||||||||    
T  5390 gaatcatataagaggtgacaaaacaacttgaatataataaacacatga--gatgcacccaagaaatctaaactttattttctaaaaaatagaaaattaat 5487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 12194 - 12093
Alignment:
Q  130 atccgcctcataagcgtatatcctcctaagataaaatagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaatctcataaacacat 229  Q
    |||||||||| ||||| ||||| ||||| |||| || |  || ||| ||| ||||||||||||||| |||||||||||||||  ||||| ||||||||||    
T  12194 atccgcctcacaagcgcatatcatcctaggatacaacaagttcttcccttatatgaatcatatcagaggtgacagaacaactccaatctgataaacacat 12095  T
Q  230 ga 231  Q
    ||    
T  12094 ga 12093  T

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Target: scaffold0028 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 110266 - 110116
Alignment:
Q  67 acctgcaaaacagtaaaccattaaataacctgaggcgtgacgaagtcaccgtc-ttaaggattt-atccgcctcataagcgtatatcctcctaagataaa 164  Q
    |||||||||| ||||| |  |||  |||| |||||||||||  |||||| ||| || ||||||| ||||||||||||| || ||||||||| |||||| |    
T  110266 acctgcaaaatagtaatctgttatctaacatgaggcgtgacatagtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagataca 110167  T
Q  165 atagatttttcgcttgtatgaatcatatcagtggtgacagaacaacttgaat 216  Q
    | || || ||||||  |||||||||| |||| ||||||||||||||| ||||    
T  110166 acag-ttcttcgctgatatgaatcatgtcagaggtgacagaacaactcgaat 110116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 127820 - 127695
Alignment:
Q  92 taacctgaggcgtgacgaagtcaccgtc-ttaaggattt-atccgcctcataagcgtatatcctcctaagataaaatagatttttcgcttgtatgaatca 189  Q
    ||||||||||||||||  |||||| ||| || ||||||| |||||||||| || || ||||||||| | |||| || || || ||| ||  |||||||||    
T  127820 taacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcagaaacgcatatcctcccatgatacaacag-ttcttccctgatatgaatca 127722  T
Q  190 tatcagtggtgacagaacaacttgaat 216  Q
    | |||| ||||||||||||||| ||||    
T  127721 tgtcagaggtgacagaacaactcgaat 127695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 4891 - 4993
Alignment:
Q  62 tgatgacctgcaaaacagtaaaccattaaataa-cctgaggcgtgacgaagtcaccgt-cttaaggatttatccgcctcataagcgtatatcctcctaag 159  Q
    |||| ||||||||||||||||||||||| |||| ||| |||| |||     |||| || |||||||||||||| |||||||||||  ||||||||| |||    
T  4891 tgataacctgcaaaacagtaaaccattacataaaccttaggcatgataggatcactgttcttaaggatttatctgcctcataagcacatatcctcccaag 4990  T
Q  160 ata 162  Q
    |||    
T  4991 ata 4993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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