View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_low_27 (Length: 292)
Name: NF16634_low_27
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 97 - 277
Target Start/End: Original strand, 46453767 - 46453946
Alignment:
| Q |
97 |
gtgacgatgatgataaatgtgatcccagctctatgagactgtaaggtctaggaatataattagttccaaaacacatttgtctgagcctcttaagtccatt |
196 |
Q |
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| T |
46453767 |
gtgacgatgatgataaatgtgatcccagctctatgagactgtaaggtctaggaatataattagttccaacacacatttgtctgagcctc-taagtccatt |
46453865 |
T |
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| Q |
197 |
ttcatatggagatagaataacttcttcagctatgatccatttctgatactattaatgttaatgttaaatactttatttgca |
277 |
Q |
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| T |
46453866 |
ttcatatggagatagaatagcttcttcagctatgatccatttctgatacatttaatattaatgttaaatactttatttgca |
46453946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 46454273 - 46454359
Alignment:
| Q |
99 |
gacgatgatgataaatgtgatcccagctctatgagactgtaaggtctaggaatataattagttccaaaacacatttgtctgagcctc |
185 |
Q |
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| T |
46454273 |
gacgatgatgataaatgtgatcccagctctatgagaccgaaaggtctaggaatataattagttccaacacacatttgtctgagcctc |
46454359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 46453595 - 46453684
Alignment:
| Q |
97 |
gtgacgatgatgataaatgtgatcccagctctatgagactgtaaggtctaggaatataattagttccaaaacacatttgtctgagcctct |
186 |
Q |
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| T |
46453595 |
gtgacgatgatgataaatgtgatcccagctctatgaggccgcaaggccagggaatataattagttccaacacacatttgtctgagcctct |
46453684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 186
Target Start/End: Original strand, 46454066 - 46454149
Alignment:
| Q |
103 |
atgatgataaatgtgatcccagctctatgagactgtaaggtctaggaatataattagttccaaaacacatttgtctgagcctct |
186 |
Q |
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| T |
46454066 |
atgacgataaatgtgatcccagctctatgagaccgtaaggtccaagaataaacttagttccaacacacatttgtctgagcctct |
46454149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 218
Target Start/End: Original strand, 28217781 - 28217810
Alignment:
| Q |
189 |
agtccattttcatatggagatagaataact |
218 |
Q |
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| T |
28217781 |
agtccattttcatatggagatagaataact |
28217810 |
T |
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