View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_low_28 (Length: 290)
Name: NF16634_low_28
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 9692209 - 9691962
Alignment:
| Q |
20 |
tttgtcaccaatgcaattactagctagaatatatatgtaattaatttaagtgtannnnnnngtacatgcagctatgtannnnnnncctaccttcaaaagg |
119 |
Q |
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| T |
9692209 |
tttgtcaccaatgcaattactagctagaatatatatgtaattaatttaagtgtatttttttgtacatgcagctatgtatttttttcctaccttcaaaagg |
9692110 |
T |
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| Q |
120 |
agtcattcctcttcataaccacccaggaatgactgttttcagtaagcttttgttgggacaaatgcacattaagtcttatgattgggttgatcctgatgtc |
219 |
Q |
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| T |
9692109 |
agtcattcctcttcataaccacccaggaatgactgttttcagtaagcttttgttgggacaaatgcacattaagtcttatgattgggttgatcctgatgtc |
9692010 |
T |
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| Q |
220 |
tctcacaatttgttgaagcaaccatctcaatgtatgtattcaaatatt |
267 |
Q |
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| T |
9692009 |
tctcacaatttgttgaagcaaccatctcaatgtatgtattcaaatatt |
9691962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 33528418 - 33528535
Alignment:
| Q |
117 |
aggagtcattcctcttcataaccacccaggaatgactgttttcagtaagcttttgttgggacaaatgcacattaagtcttatgattgggttgatcctgat |
216 |
Q |
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| T |
33528418 |
aggagtcattcccctccataaccacccaggcatgactgttttcagcaaacttctattagggcaaatgcacattaagtcttatgattgggttgatcatgag |
33528517 |
T |
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| Q |
217 |
gtctctcacaatttgttg |
234 |
Q |
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| T |
33528518 |
gcctctcacaacttgttg |
33528535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 2201621 - 2201709
Alignment:
| Q |
117 |
aggagtcattcctcttcataaccacccaggaatgactgttttcagtaagcttttgttgggacaaatgcacattaagtcttatgattggg |
205 |
Q |
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|||||| ||||||||||| || ||||| |||||||| ||||| || |||||| | || ||| |||||||| || ||||||||||||| |
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| T |
2201621 |
aggagttattcctcttcacaatcaccctggaatgacggtttttagcaagcttctatttggaactatgcacatcaaatcttatgattggg |
2201709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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