View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_low_30 (Length: 271)
Name: NF16634_low_30
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 39470796 - 39471043
Alignment:
| Q |
14 |
cagagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattag |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
39470796 |
cagagatgggaatggatttagcgtagacatcagattctgcagtgtgtgggaatttcatgactaagacagttattcagaggcggttatcatggttgattag |
39470895 |
T |
|
| Q |
114 |
aagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcacaagacatacact |
213 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39470896 |
aagcttggcgaactctaaggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactttcttcatgttggagcacaagacatacact |
39470995 |
T |
|
| Q |
214 |
tactcagtgtgagttactgtttctctgaattgttctttgatatacctg |
261 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39470996 |
tactcagtgtgagttactgtttctctgaattgttctttgatatacctg |
39471043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 39464573 - 39464816
Alignment:
| Q |
14 |
cagagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattag |
113 |
Q |
| |
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|||| |||||||||||||||| ||||||||| ||||||| || ||||||| ||| ||||| |||| ||||||||||| ||||||||| |||||||||| |
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| T |
39464573 |
cagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggttattcggagacggttatcacggttgattag |
39464672 |
T |
|
| Q |
114 |
aagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcacaagacatacact |
213 |
Q |
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|||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||| |||||| ||||| |||| |
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| T |
39464673 |
aagcttcgcaaactcaagggcagaaactagatgacctacagcgggaaaagggataaacactacttctgctttcttcattttgaagcacaggacatgcact |
39464772 |
T |
|
| Q |
214 |
tactcagtgtgagttactgtttctctgaattgttctttgatata |
257 |
Q |
| |
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||||| || |||||| ||||| ||||||||||| ||||||||| |
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| T |
39464773 |
tactcggtttgagttgatgtttttctgaattgttgtttgatata |
39464816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 39472164 - 39471978
Alignment:
| Q |
16 |
gagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaa |
115 |
Q |
| |
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||||| |||| |||||||| ||||||||| | |||||| ||||||||||||| || || || |||||||||||||| ||||||||| |||||||||||| |
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| T |
39472164 |
gagataggaagggatttagtgtagacatcggtttctgtgatgtgtgggaatttgataactaaaacagttattcggagacggttatcacggttgattagaa |
39472065 |
T |
|
| Q |
116 |
gcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcaca |
202 |
Q |
| |
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|||| || ||||| | |||||||||| |||||| |||| |||||||||| |||||||||||| || ||||||| |||||||||| |
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| T |
39472064 |
gcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaagggacaaacaccacttctgctttcttcatcttggagcaca |
39471978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 258
Target Start/End: Complemental strand, 39460354 - 39460139
Alignment:
| Q |
40 |
acatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaa |
139 |
Q |
| |
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||||| ||||||| |||| ||||| ||||||||| | |||||| ||||||||||| |||||| ||||| |||||||||| |||||||| | || ||| |
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| T |
39460354 |
acatcggattctgatgtgtatgggagtttcatgactaggacagtaattcggaggcgcttatcacggttggttagaagctttgcgaactcaagggtggaat |
39460255 |
T |
|
| Q |
140 |
ctagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcacaagacatacacttactcagtgtgagttactgtttctct |
239 |
Q |
| |
|
||||||| | | ||||||||||||||||||| ||||| || ||||||| |||||||||| || |||| ||||||| ||| ||||||||||| | | |
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| T |
39460254 |
ctagatggctcggaccgggaaaagggataaacacaacttctgctttcttcatcttggagcacaggatatacccttactc--tgtaagttactgttt-ttt |
39460158 |
T |
|
| Q |
240 |
gaattgttctttgatatac |
258 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
39460157 |
gaattgttctttgatatac |
39460139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 39458337 - 39458498
Alignment:
| Q |
18 |
gatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagc |
117 |
Q |
| |
|
||||| || |||||||| ||||||||| |||||| |||||||| |||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |
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| T |
39458337 |
gatggcaagggatttagtgtagacatctatttctgttgtgtgtggaaatttcatgaccaagatagttattcggagacggttatcacggttgattagaagc |
39458436 |
T |
|
| Q |
118 |
ttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttc |
179 |
Q |
| |
|
|| || || || | || |||||||||||||| ||| | || ||| ||||| ||||||||| |
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|
| T |
39458437 |
tttgcaaattcgagggtggaaactagatgaccaacaccaggtgaagagataatcaccacttc |
39458498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 39486554 - 39486406
Alignment:
| Q |
49 |
tctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgac |
148 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||| || || || | || ||||||||||||| |
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| T |
39486554 |
tctgtggtgtgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgac |
39486455 |
T |
|
| Q |
149 |
ctacagcgggaaaagggataaacaccacttccactgtcttcatgttgga |
197 |
Q |
| |
|
| ||| | || ||||||||| ||||||||| || ||||||| ||||| |
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|
| T |
39486454 |
caacaccaggtgaagggataatcaccacttctgctttcttcatcttgga |
39486406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 39480452 - 39480338
Alignment:
| Q |
65 |
atttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagg |
164 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| ||||| || | || |||||||||||||| ||| | || |||| |
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|
| T |
39480452 |
atttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagg |
39480353 |
T |
|
| Q |
165 |
gataaacaccacttc |
179 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
39480352 |
gataatcaccacttc |
39480338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 40 - 195
Target Start/End: Complemental strand, 39454743 - 39454588
Alignment:
| Q |
40 |
acatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaa |
139 |
Q |
| |
|
||||||| ||| || | |||||| ||||| | ||| || |||||||||||||| ||||||||| ||||||||||||| || |||||||| | || |||| |
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|
| T |
39454743 |
acatcagtttcagtggcgtgtggaaatttgaggactaaaacagttattcggagacggttatcacggttgattagaagtttcgcgaactcaagggtggaaa |
39454644 |
T |
|
| Q |
140 |
ctagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttg |
195 |
Q |
| |
|
||| ||| || ||| | ||| ||||||||||||||||||| || ||||||||||| |
|
|
| T |
39454643 |
ctaaatggccaacaccaggagaagggataaacaccacttctgctttcttcatgttg |
39454588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 39451128 - 39450942
Alignment:
| Q |
16 |
gagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaa |
115 |
Q |
| |
|
||||| |||| |||||||| || ||||||| ||||| | ||||||||||| || || || ||||||| |||||| ||||||||| | |||||||||| |
|
|
| T |
39451128 |
gagataggaagggatttagtgttgacatcattttctgatatatgtgggaatttgataactaaaacagttactcggagacggttatcacgattgattagaa |
39451029 |
T |
|
| Q |
116 |
gcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcaca |
202 |
Q |
| |
|
|||| ||||| || | || ||||||||||| | ||| | ||||||||||||||||||||||| || ||||||| ||| |||||| |
|
|
| T |
39451028 |
gcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctttcttcatcttgaagcaca |
39450942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 39475634 - 39475453
Alignment:
| Q |
16 |
gagatgggaatggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaa |
115 |
Q |
| |
|
||||| |||| |||||||| || ||||||| |||||| ||||||||||||| || || || ||||||| |||||| ||||||||| | |||||||||| |
|
|
| T |
39475634 |
gagataggaagggatttagtgttgacatcattttctgttatgtgtgggaatttgataactaaaacagttactcggagacggttatcacgattgattagaa |
39475535 |
T |
|
| Q |
116 |
gcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttgga |
197 |
Q |
| |
|
|||| | ||||| | | |||| |||||| | | | ||||||||||||||||||||||||| || ||||||| ||||| |
|
|
| T |
39475534 |
gcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttgga |
39475453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 43312608 - 43312717
Alignment:
| Q |
70 |
atgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataa |
169 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||| ||||||| |||||||| || ||||| | || || |||| ||| || ||| | ||| ||||||||| |
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|
| T |
43312608 |
atgaccaagacggttacacggagacggttatcacggttgatgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataa |
43312707 |
T |
|
| Q |
170 |
acaccacttc |
179 |
Q |
| |
|
|||||||||| |
|
|
| T |
43312708 |
acaccacttc |
43312717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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