View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_low_31 (Length: 239)
Name: NF16634_low_31
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_low_31 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 97598 - 97824
Alignment:
| Q |
1 |
aacattctggtatgaatgaataaaattgagaatctttctactagaaattgatatatgatatgtgttaataatatatttgatgctctttcagagacttcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
97598 |
aacattctggtatgaatgaataaaattgagaatctttctactagaaattgatatatgatatgtgttattaatatatttgatgctctttcagagacttcat |
97697 |
T |
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| Q |
101 |
ctgaaaggctaggaggttgacaatttta--agagtccactagcggcgcgacaatgcaggttgacgatggaggatcaacaagaagaagaaaaaaccaccag |
198 |
Q |
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| T |
97698 |
ctgaaaggctaggaggttgacaattttaatagagtccactagcggagcgacaatgcaggttgacgatggaggatcaacaagaagaaaaaaaaaccaccag |
97797 |
T |
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| Q |
199 |
ttaaacttagagctgaatgatcaaatt |
225 |
Q |
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||||||||||||||||||||||||||| |
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| T |
97798 |
ttaaacttagagctgaatgatcaaatt |
97824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 89758 - 89910
Alignment:
| Q |
1 |
aacattctggtatgaatgaataaaattgagaatctttctactagaaattgatatatgatatgtgttaataatatatttgatgctctttcagagacttcat |
100 |
Q |
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||||||| |||| |||||||||||||| || ||||||||||||||||||||| |||||||| || ||||||| |||||| | |||||||||||||||||| |
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| T |
89758 |
aacattcaggtaagaatgaataaaatttagtatctttctactagaaattgatttatgatatatgataataatctatttgtttctctttcagagacttcat |
89857 |
T |
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| Q |
101 |
ctgaaaggctaggaggttgacaattttaa--gagtccactagcggcgcgacaa |
151 |
Q |
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| T |
89858 |
cagaaaagctaggaggttgacaattttaatggattccactagcggcgcgacaa |
89910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 40868684 - 40868458
Alignment:
| Q |
1 |
aacattctggtatgaatgaataaaattgagaatctttctactagaaattgatatatgatatgtgttaataatatatttgatgctctttcagagacttcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40868684 |
aacattctggtatgaatgaataaaattgagaatctttctactagaaattgatatatgatatgtgttattaatatatttgatgctctttcagagacttcat |
40868585 |
T |
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| Q |
101 |
ctgaaaggctaggaggttgacaatttta--agagtccactagcggcgcgacaatgcaggttgacgatggaggatcaacaagaagaagaaaaaaccaccag |
198 |
Q |
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| T |
40868584 |
ctgaaaggctaggaggttgacaattttaatagagtccactagcggagcgacaatgcaggttgacgatggaggatcaacaagaagaaaaaaaaaccaccag |
40868485 |
T |
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| Q |
199 |
ttaaacttagagctgaatgatcaaatt |
225 |
Q |
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| T |
40868484 |
ttaaacttagagctgaatgatcaaatt |
40868458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 40876525 - 40876373
Alignment:
| Q |
1 |
aacattctggtatgaatgaataaaattgagaatctttctactagaaattgatatatgatatgtgttaataatatatttgatgctctttcagagacttcat |
100 |
Q |
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||||||| |||| |||||||||||||| || ||||||||||||||||||||| |||||||| || ||||||| |||||| | |||||||||||||||||| |
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| T |
40876525 |
aacattcaggtaagaatgaataaaatttagtatctttctactagaaattgatttatgatatatgataataatctatttgtttctctttcagagacttcat |
40876426 |
T |
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| Q |
101 |
ctgaaaggctaggaggttgacaattttaa--gagtccactagcggcgcgacaa |
151 |
Q |
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| |||| |||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
40876425 |
cagaaaagctaggaggttgacaattttaatggattccactagcggcgcgacaa |
40876373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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