View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_low_32 (Length: 234)
Name: NF16634_low_32
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1604074 - 1604290
Alignment:
| Q |
1 |
gaagctttcagaagcagaaaagggtatccttgattggcttaaagctaacaagtgatatagtattgttttttctcaattgctagtgtggctagctactttt |
100 |
Q |
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| T |
1604074 |
gaagctttcagaagcagaaaagggtatccttgattggcttaaagctaacaagtgatacagtattgttttttctcaattgctagagtggctagctactttt |
1604173 |
T |
|
| Q |
101 |
catttttctaactgctgctccaatgacattcaattctccaccttaaaattggacattatatccatgtagttgcactcaccacctagcttgtaaattttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1604174 |
catttttctaactgctgctccaatgacattcaattctacaccttaaaattggacattatatccatgtagttgcactcaccacctagcttgtaaattttga |
1604273 |
T |
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| Q |
201 |
ttttctgttgggaaatt |
217 |
Q |
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||||||||||||||||| |
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| T |
1604274 |
ttttctgttgggaaatt |
1604290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 48007467 - 48007522
Alignment:
| Q |
1 |
gaagctttcagaagcagaaaagggtatccttgattggcttaaagctaacaagtgat |
56 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48007467 |
gaagctttcagaagcagaaaagggtatccttgattggcttaaagctaacaagtgat |
48007522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 48007571 - 48007615
Alignment:
| Q |
176 |
tcaccacct-agcttgtaaattttgattttctgttgggaaatttg |
219 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
48007571 |
tcaccaccttagcttgtaaattttgattttctgttggaaaatttg |
48007615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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