View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_low_4 (Length: 636)
Name: NF16634_low_4
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Original strand, 39146156 - 39146783
Alignment:
| Q |
1 |
agttagtacacttcaagactttgttcaaaattaaattatttattcatcctgtaaaaagcaaaatttcctttgacaa-agttacaagaaaaacttagtctg |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39146156 |
agttagtacacttcaagactttgttcaaaattaaattatttattcatcctgtaaaaagcaaaatttcctttgacaatagttacaagaaaaacttagtctg |
39146255 |
T |
|
| Q |
100 |
caatatcggcaattacctcaaatttaattggctcaaaaagtaggtttgcttgccaagatgctaatgactccgaaccctacataataacgttttatcaaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39146256 |
caatatcggcaattacctcaaatttaattggctcaaaaagtaggtttgcttgccaagatgctaatgactccgaaccctacataataacgttttatcaaat |
39146355 |
T |
|
| Q |
200 |
tttagcggtcacaaataacaacttactagctgcaaccaatgagtataacttatatagcnnnnnnnnnnnnnttgatctcccctacctgaataacaaaaaa |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39146356 |
tttagcggtcacaaataacaacttactagctgcaaccaatgagtataacttatatagcaaaagaacaaaaattgatctcccctacctgaataacaaaaaa |
39146455 |
T |
|
| Q |
300 |
tcttgtaccactctggttatcatcacagatgaaccattcacaaggtgatgaatgagttgagtttagatcatctgcaacagcctgttttacttcctccttt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39146456 |
tcttgtaccactctggttatcatcacagatgaaccattcacaaggtgatgaatgagttgagtttagatcatctgcaacagcctgttttacttcctccttt |
39146555 |
T |
|
| Q |
400 |
gccgcaaccactgctgtcactgaatcagtagtcgccatcaaagataccacttccgggttcatcatgttaaggctttcattgcttccttcaccagtcgctg |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39146556 |
gccgcaaccactgctgtcactgaatcagtagtcgccatcaaagataccacttccgggttcatcatgttaaggctttcattgcttccttcaccagtcgctg |
39146655 |
T |
|
| Q |
500 |
catttgaagaagtgaatggaagtatactctttgtctgtgcgtgcagataagatgcagcagacgcagcaatattataagcagccgttgcacttatcctata |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39146656 |
catttgaagaagtgaatggaagtatactctttgtctgtgcgtgcagataagatgcagcagacgcagcaatattataagcagccgttgcacttatcctata |
39146755 |
T |
|
| Q |
600 |
tccaccattatttggctcctttgcttct |
627 |
Q |
| |
|
||||||||||||||||||||||| |||| |
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| T |
39146756 |
tccaccattatttggctcctttgtttct |
39146783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 319 - 441
Target Start/End: Complemental strand, 44695392 - 44695270
Alignment:
| Q |
319 |
tcatcacagatgaaccattcacaaggtgatgaatgagttgagtttagatcatctgcaacagcctgttttacttcctcctttgccgcaaccactgctgtca |
418 |
Q |
| |
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||||| || |||||||||||||| ||||| ||| |||||||||| ||||||||||| || |||||||||||||| ||||| ||||| |||||||||| |
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| T |
44695392 |
tcatcgcatatgaaccattcacagggtgaagaacttgttgagtttaaatcatctgcaaaagattgttttacttcctcatttgcggcaacaactgctgtca |
44695293 |
T |
|
| Q |
419 |
ctgaatcagtagtcgccatcaaa |
441 |
Q |
| |
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||||| ||||| ||||||||| |
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|
| T |
44695292 |
ttgaattggtagttgccatcaaa |
44695270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 44695661 - 44695588
Alignment:
| Q |
109 |
caattacctcaaatttaattggctcaaaaagtaggtttgcttgccaagatgctaatgactccgaaccctacata |
182 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||| ||||| ||| | |||||||| ||||||| |||| |
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|
| T |
44695661 |
caattacctcaaattgaactggctcaaaaagtaggtttgcctgccaggattcaaatgactctgaaccctgcata |
44695588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 48451029 - 48450964
Alignment:
| Q |
112 |
ttacctcaaatttaattggctcaaaaagtaggtttgcttgccaagatgctaatgactccgaaccct |
177 |
Q |
| |
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|||||||||||||| | |||||||| | ||||||||||||||||||||||| || || ||||||| |
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| T |
48451029 |
ttacctcaaatttagtaggctcaaagaagaggtttgcttgccaagatgctaaggagtctgaaccct |
48450964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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