View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_low_6 (Length: 582)
Name: NF16634_low_6
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_low_6 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 35 - 563
Target Start/End: Original strand, 7425604 - 7426132
Alignment:
| Q |
35 |
atccgaagtcgtggcagattgacaaattgttgattcatagtctgaggtgggggtctgtctgtggtgttttcttgttgttgctgactgtggtgtttctgtc |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425604 |
atccgaagtcgtggcagattgacaaattgttgattcatagtctgaggtgggggtctgtctgtggtgttttcttgttgttgctgactgtggtgtttctgtc |
7425703 |
T |
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| Q |
135 |
ggtctgctgaagaggggatgttctcttaatgtctcgagcttttgtttggaagcagagggagtcttgtggtgctgtgagtataggagctaaggtggttatt |
234 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425704 |
ggtctgctgaagagggaatgttctcttaatgtctcgagcttttgtttggaagcagagggagtcttgtggtgctgtgagtataggagctaaggtggttatt |
7425803 |
T |
|
| Q |
235 |
attaaattacttcaatttggtagcaagaggatatggctttagcagggttgtaatttttggcatttgagagtgccttttctgtaacaggtgcaggagtctg |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7425804 |
attaaattacttcaatttggtagcaagaggatatggctttagcagggttataatttttggcatttgagagtgccttttctgtaacaggtgcaggcgtctg |
7425903 |
T |
|
| Q |
335 |
ttgtagtgcagcagggacatctcattttgaatgcagatatagcaaggcgctgacagcaatattggtggtattgcaacagtataattcattaattgagaaa |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425904 |
ttgtagtgcagcagggacatctcattttgaatgcagatatagcaaggcgctgacagcaatattggtggtattgcaacagtataattcattaattgagaaa |
7426003 |
T |
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| Q |
435 |
atattttttctttctcagggcatattaagatgttattctattctcttaaatggcagcagcatttgcaagttgttttcaaaattatgcgttaaattttcaa |
534 |
Q |
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| T |
7426004 |
atattttttctttctcagggcatattaagatgttattctattctcttaaatggcagcagcatttgcaagttgttttcaaaattatgcgttaaatttttaa |
7426103 |
T |
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| Q |
535 |
caattgcaatcttggcaaaccatggggaa |
563 |
Q |
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| T |
7426104 |
caattgcaatcttggcaaaccatggggaa |
7426132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 35 - 561
Target Start/End: Complemental strand, 18127 - 17587
Alignment:
| Q |
35 |
atccgaagtcgtggcagattgacaaattgttgattcatagtctgaggtgggggtctgtctgtggtgttttcttgttgttgctgactgtggtgtttctgtc |
134 |
Q |
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||||||||| | ||||| ||| || || |||||||||||||||||| |||||| ||||| ||||| ||||||| || ||||| |||||||||||| ||| |
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| T |
18127 |
atccgaagttgcggcagtttggcagttttttgattcatagtctgaggagggggtgtgtctatggtgctttcttgctgctgctggctgtggtgtttcggtc |
18028 |
T |
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| Q |
135 |
ggtctgctgaagaggggatgttctcttaatgtctcgagcttttgtttggaagcagagggagtcttgtggtgctgtgagtat--aggagctaag-gtggtt |
231 |
Q |
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|| | ||| |||||||| ||||| || |||| | ||||||| |||||||||||||||||||| || |||||| || | || |||||| |||||| |
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| T |
18027 |
ggccgtctgtagaggggacattctcatagggtctggtgcttttggttggaagcagagggagtcttatgatgctgtttgttttaagaagctaaatgtggtt |
17928 |
T |
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| Q |
232 |
attattaaattacttcaatttggtagcaagagga------tatggctttagcagggttgtaatttttggcatttgagagtgccttttctgtaacaggtgc |
325 |
Q |
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|||||| ||| | ||||| ||| ||||||| || | |||||||||||| | |||||||||||||||| | | ||||||||||||||| | |
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| T |
17927 |
attattcaatcagttcaagttgacagcaagaagaggaggctttggctttagcagttctaatatttttggcatttgagggcgttttttctgtaacaggtac |
17828 |
T |
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| Q |
326 |
aggagtctgttgtagtgcagcaggga--------catctcattttgaatgcagatatagcaaggcgctgacagcaatattggtggtattgcaacagtata |
417 |
Q |
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||| | | | ||||||| || ||| ||||||| ||||| |||| ||||||||||| |||| |||||| ||||||||||| ||||||| | |
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| T |
17827 |
aggcatattatttagtgcaacatggattttctttcatctcagtttgattgcatatatagcaaggtgctggcagcaacattggtggtatcctaacagtaga |
17728 |
T |
|
| Q |
418 |
attcattaattgagaaaatattttttctttctcagggcatattaagatgttattctattctcttaaatggcagcagcatttgcaagttgttttcaaaatt |
517 |
Q |
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|||| ||||||||||||| |||| |||| |||||||| || || |||| ||||||||||||||||||||||||| | | |||||||||| ||| |
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| T |
17727 |
attccttaattgagaaaagattt---ctttgtcagggcaggttgagttgttcagctattctcttaaatggcagcagcatctttatgttgttttcatcatt |
17631 |
T |
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| Q |
518 |
atgcgttaaattttcaacaattgcaatcttggcaaaccatgggg |
561 |
Q |
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||| ||||||||||| || |||||||||| || |||| |||||| |
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| T |
17630 |
atgtgttaaattttcgactattgcaatctcgggaaactatgggg |
17587 |
T |
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