View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16634_low_9 (Length: 508)
Name: NF16634_low_9
Description: NF16634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16634_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 42 - 493
Target Start/End: Complemental strand, 8571958 - 8571507
Alignment:
| Q |
42 |
agcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtgaaagatcaaat |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8571958 |
agcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtaaaagatcaaat |
8571859 |
T |
|
| Q |
142 |
tggtagtttctattatttcccatctcttgcattccacaaagctgctggtggttttggaggaattagaattctaagtaggccaagaattcccgttcccttc |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8571858 |
tggtagtttctattatttcccatctcttgcattccacaaagctgctggtggttttggaggaattagaattctaagtaggccaagaattcccgttcccttc |
8571759 |
T |
|
| Q |
242 |
gatgatcccgctggtgattacactgtcctcattggagattggtacaagtccaaccacacggtaactaatcatttactatcttcatcatcattttcagacc |
341 |
Q |
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| T |
8571758 |
gatgatcccgctggtgattacactgtcctcattggagattggtacaagtccaaccacacggtaactaatcatttactatcttcatcatcattttcagacc |
8571659 |
T |
|
| Q |
342 |
atgattttcattttcagtaaaattgattgtattgtattatgtgacaggatttgaaggcccaacttgataacggaaagaagttgcctttccctgatggaat |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8571658 |
atgattttcattttcagtaaaattgattgtattgtattatgtgacaggatttgaaggcccaacttgataacggaaagaagttgcctttccctgatggaat |
8571559 |
T |
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| Q |
442 |
tcttatcaatggtcgtgggtctggaggatcatctctcaatgtggagcaaggt |
493 |
Q |
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| T |
8571558 |
tcttatcaatggtcgtgggtctggaggatcatctctcaatgtggagcaaggt |
8571507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 42 - 304
Target Start/End: Complemental strand, 53754570 - 53754308
Alignment:
| Q |
42 |
agcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtgaaagatcaaat |
141 |
Q |
| |
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|||||||||||||||||| ||||||||| || | ||||||||||| ||||| ||||| || | |||||||||||| || ||||||||||| |||||||| |
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| T |
53754570 |
agcagagaaggaactcattcgaagatggtgtttcgggaacaacatgccccatcccaccagggaggaacttcacatatattcttcaagtgaaggatcaaat |
53754471 |
T |
|
| Q |
142 |
tggtagtttctattatttcccatctcttgcattccacaaagctgctggtggttttggaggaattagaattctaagtaggccaagaattcccgttcccttc |
241 |
Q |
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||| || || || || || |||||||| ||||| || ||||| ||||||||||||||||| ||||| || || ||||| || |||||||| || || ||| |
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| T |
53754470 |
tggaagcttttactactttccatctctagcatttcaaaaagcagctggtggttttggaggcattaggatactcagtagacctagaattccagtccctttc |
53754371 |
T |
|
| Q |
242 |
gatgatcccgctggtgattacactgtcctcattggagattggtacaagtccaaccacacggta |
304 |
Q |
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||| || ||||| |||||||||||||| ||||| |||||||||||||||||||| |||||| |
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| T |
53754370 |
cctgaaccagctggagattacactgtccttattggtgattggtacaagtccaaccatacggta |
53754308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 63 - 199
Target Start/End: Complemental strand, 28940921 - 28940785
Alignment:
| Q |
63 |
aagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtgaaagatcaaattggtagtttctattatttccc |
162 |
Q |
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|||||||||| | ||| |||||||||||||| || ||||| |||||||||||||||| ||||||||| |||||||||||||| || |||| ||||| || |
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| T |
28940921 |
aagatggagtttatggtacaacatgtcccatccctcctgggaagaacttcacatacacacttcaagtcaaagatcaaattggaagcttcttctattttcc |
28940822 |
T |
|
| Q |
163 |
atctcttgcattccacaaagctgctggtggttttgga |
199 |
Q |
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||||||||| || ||||| || ||||||||||||||| |
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| T |
28940821 |
atctcttgcttttcacaaggcagctggtggttttgga |
28940785 |
T |
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