View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16635_high_1 (Length: 721)
Name: NF16635_high_1
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16635_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 655; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 14 - 703
Target Start/End: Complemental strand, 36467903 - 36467213
Alignment:
| Q |
14 |
cacagatccaagtagaaaacgcacacaaccaatccacataaccatacagcagacatccaaatagttacaatgcattcttctttttgcatactaattgacg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36467903 |
cacagatccaagtagaaaacgcacacaaccaatccacataaccatacagcagacatccaaatagttacaatgcattcttctttttgcatactaattgacg |
36467804 |
T |
|
| Q |
114 |
cataataatgttcccattagaataacgtttcacatcatcctttcttacttcaaacccgtggtattttgcaaacaatacataaaactccgtagcttcatcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36467803 |
cataataatgttcccattagaataacgtttcacatcatcctttcttacttcaaacccgtggtattttgcaaacaatacataaaactccgtagcttcatcc |
36467704 |
T |
|
| Q |
214 |
tctgtgttgaattccatatcctttacatcatcatctgtcacatcattgatgcatttgtaaccatcaaagttctttttcccttgctcattgcaaacaccat |
313 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36467703 |
tctgtgttgaattccatatcccttacatcatcatctgtcacatcattgatgcatttgtaaccatcaaagttctttttcccttgctcattgcaaacaccat |
36467604 |
T |
|
| Q |
314 |
taccatggtttaattccacaccgtctgcatctccatcagtacgaacatcgttgctgctattaacttttatatcttcagtatcactatcaatgtcactatc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36467603 |
taccatggtttaattccacaccgtctgcatctccatcagtacgaacatcgttgctgctattaacttttatatcttcagtatcactatcaatgtcactatc |
36467504 |
T |
|
| Q |
414 |
agtgtcaacatcattaacacaattaaattccaccccatttgtatcattatcagtgtcaatattattaacactattaaattccaccttatctgtatcacta |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36467503 |
agtgtcaacatcattaacacaattaaattccaccccatttgtatcattatcagtgtcaatattattaacactattaaattccaccttatctgtatcacta |
36467404 |
T |
|
| Q |
514 |
tatacatcaaaaggcgatgttgcttcactatatgtagacattttaaaattataacctac-nnnnnnnncattatagtgatgattagttaatcattgtgag |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36467403 |
tatacatcaaaaggcgatgttgcttcactatatgtagacattttaaaattataacctacaaaaaaaaacattatagtgatgattagttaatcattgtgag |
36467304 |
T |
|
| Q |
613 |
aaatgcttcaagtcatgtagggtgatgacttagagccaattagactataagaagagaaagatgtaggcaggcagtgcaggattgaactaat |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36467303 |
aaatgcttcaagtcatgtagggtgatgacttagagccaattagactataagaagagaaagatgtaggcaggcagtgcaggattgaactaat |
36467213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 241 - 400
Target Start/End: Complemental strand, 28738898 - 28738738
Alignment:
| Q |
241 |
tcatcatctgtcacatcattgatgcatttgtaaccatcaaagttct-ttttcccttgctcattgcaaacaccattaccatggtttaattccacaccgtct |
339 |
Q |
| |
|
||||||| |||||||| | | |||||||||||||||| | |||| |||||||||||||| |||||||||||||||||||||| ||||||| || | || |
|
|
| T |
28738898 |
tcatcatttgtcacattactaatgcatttgtaaccattggaattctcttttcccttgctcactgcaaacaccattaccatggttgaattccatactgcct |
28738799 |
T |
|
| Q |
340 |
gcatctccatcagtacgaacatcgttgctgctattaacttttatatcttcagtatcactat |
400 |
Q |
| |
|
|||||| |||| ||||||||| | || | |||| |||| |||||||||||||||||||| |
|
|
| T |
28738798 |
acatctctatcactacgaacattgatgtcgttattgacttctatatcttcagtatcactat |
28738738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 241 - 379
Target Start/End: Complemental strand, 28718587 - 28718448
Alignment:
| Q |
241 |
tcatcatctgtcacatcattgatgcatttgtaaccatcaaagttct-ttttcccttgctcattgcaaacaccattaccatggtttaattccacaccgtct |
339 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| |||| | | |||| ||||| ||||||| |||||||||||||||||||||| |||| || | || || |
|
|
| T |
28718587 |
tcatcattggtcacatcactgatgcatttgtagccattagaattctcttttcaattgctcactgcaaacaccattaccatggttgaatttcatatcgcct |
28718488 |
T |
|
| Q |
340 |
gcatctccatcagtacgaacatcgttgctgctattaactt |
379 |
Q |
| |
|
| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
28718487 |
gtatctctatcagtacgaacatcgttgccgctattaactt |
28718448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 477 - 572
Target Start/End: Complemental strand, 28718419 - 28718324
Alignment:
| Q |
477 |
attaacactattaaattccaccttatctgtatcactatatacatcaaaaggcgatgttgcttcactatatgtagacattttaaaattataacctac |
572 |
Q |
| |
|
|||||| ||||||||| |||| | |||| |||||||||||||||||| |||||| |||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
28718419 |
attaacgctattaaataccacttcatctatatcactatatacatcaagaggcgacattgcttcattgtatgtagacattttaaaattataacctac |
28718324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 568
Target Start/End: Complemental strand, 28738716 - 28738653
Alignment:
| Q |
506 |
tatcactatatacatcaaaaggcgatgttgcttcactatatg-tagacattttaaaattataac |
568 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
28738716 |
tatcactatatacatcaagaggcgacattgcttcactgtatgccagacatttttaaattataac |
28738653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University