View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16635_high_12 (Length: 318)

Name: NF16635_high_12
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16635_high_12
NF16635_high_12
[»] chr1 (4 HSPs)
chr1 (17-309)||(29464864-29465156)
chr1 (19-261)||(29214500-29214744)
chr1 (17-280)||(4679444-4679706)
chr1 (156-286)||(15594189-15594319)
[»] chr7 (9 HSPs)
chr7 (17-309)||(10495235-10495526)
chr7 (17-309)||(13334229-13334520)
chr7 (17-299)||(8666432-8666713)
chr7 (17-309)||(8671933-8672224)
chr7 (17-299)||(8653454-8653741)
chr7 (78-280)||(8658437-8658638)
chr7 (41-280)||(1300495-1300733)
chr7 (44-221)||(8653229-8653405)
chr7 (130-289)||(3146392-3146551)
[»] chr4 (1 HSPs)
chr4 (17-309)||(9336755-9337046)
[»] chr2 (2 HSPs)
chr2 (17-280)||(16658413-16658672)
chr2 (170-259)||(16662909-16662998)
[»] chr6 (1 HSPs)
chr6 (146-260)||(28910518-28910632)
[»] chr3 (1 HSPs)
chr3 (231-281)||(53416947-53416997)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 29464864 - 29465156
Alignment:
Q  17 tcaagaacatctatttctttctttttgttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagc 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29464864 tcaagaacatctgtttctttctttttgttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagc 29464963  T
Q  117 atcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatctt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||    
T  29464964 atcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattacattggccttccttacgaattgcatatctt 29465063  T
Q  217 ccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaacctttctttgccattagtaatggcgatcgcattcatat 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||    
T  29465064 ccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgataacctttctttgccattagtaatggtgatcacattcatat 29465156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 29214744 - 29214500
Alignment:
Q  19 aagaacatctatttctttctttttgttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagcat 118  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||  || ||||||| |||||||||||||||||||||||||| ||| ||||| |    
T  29214744 aagaacatctatttatttctctttgttattcttatcaagcaaattcacaacgatagtaattacattgttgatcttctcactttcttgagggggagagctt 29214645  T
Q  119 caaattaacaaccttctt-ctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatcttc 217  Q
    ||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  29214644 caaattaacaaccgtctttctttaaagtatttttcatattgtaaacacaagaatctaatgcactcgttaccttggccttccttaagaattgcatatcttc 29214545  T
Q  218 cacatggtatttctcagcttctttaatc-attttttcaatttcta 261  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  29214544 cacatggtatttctcagcttctttaatcaattttttcaatttcta 29214500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 4679706 - 4679444
Alignment:
Q  17 tcaagaacatctatttctttctttttgttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagc 116  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||    |  || |||||||||| ||||||||| |||||||| | |   || ||||    
T  4679706 tcaagaacatctatttctttctgttcgttattcttatcaagcaagttggtggccactgtaattgcatcgttgatcttttcactttcatcacaaga-gagc 4679608  T
Q  117 atcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatctt 216  Q
     | ||||||||| ||||||||||||| | |||||| ||||||||||||||| | || ||||||||||||||||| ||||||| ||| |||| | ||||||    
T  4679607 tttaaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatctt 4679508  T
Q  217 ccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaacctttcttt 280  Q
    || |  | |||||||||||||||| ||||| ||||| || ||  || |||| ||||||||||||    
T  4679507 cctcgcgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttcttt 4679444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 286
Target Start/End: Original strand, 15594189 - 15594319
Alignment:
Q  156 ttgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaa 255  Q
    |||||||||||   |||||||||| |||||||||  ||||||| || ||||| |  ||||||  || | |||| ||| ||||||| ||||||||||| ||    
T  15594189 ttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaa 15594288  T
Q  256 tttctaacgttgacaacctttctttgccatt 286  Q
    ||||  | | |||||||||||||||| ||||    
T  15594289 tttcatatgctgacaacctttctttgtcatt 15594319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 10495526 - 10495235
Alignment:
Q  17 tcaagaacatctatttctttctttttgttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagc 116  Q
    |||||||||||||||| ||||| ||| ||| |||||||||||||||||| ||  | ||||||||||||| ||||||||||| ||||||||  ||| |||     
T  10495526 tcaagaacatctatttttttctctttattactcttatcaagcaaattcatagcaaaagtaattgcattgctgatcttctcaatttcttgagcgga-gagg 10495428  T
Q  117 atcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatctt 216  Q
    || | ||||||  ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  10495427 atgagattaacgtccttcttctttaaagtgttcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccttaagaatttcatatctt 10495328  T
Q  217 ccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaacctttctttgccattagtaatggcgatcgcattcatat 309  Q
    | ||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||| |||||| |||||||    
T  10495327 cgacatggtatttcttagcttctttaatcatttttttaatttctaacattgacaacctttctttgtcattagtaatggtgatcgcgttcatat 10495235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 13334520 - 13334229
Alignment:
Q  17 tcaagaacatctatttctttctttttgttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagc 116  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||| ||  | ||||||||||||| ||||||||| | |||||||| |||| |||     
T  13334520 tcaagaacatctatttctttctctttattattcttatcaagcaaattcatagcaaaagtaattgcattgctgatcttcttaatttcttgagggga-gagg 13334422  T
Q  117 atcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatctt 216  Q
    || | ||||||  | ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| | ||||||    
T  13334421 atgagattaacgtctttcttctttaaagtgttcttcatattgtaaacacaagaatctaatgcattcattaccttggccttccttaagaatttcttatctt 13334322  T
Q  217 ccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaacctttctttgccattagtaatggcgatcgcattcatat 309  Q
    | |||||||||| || ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |||||| |||||||    
T  13334321 cgacatggtattccttagcttctttaatcattttttcaatttctaacattgataacctttctttgtcattagtaatggtgatcgcgttcatat 13334229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 8666432 - 8666713
Alignment:
Q  17 tcaagaacatctatttctttctttttgttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagc 116  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||| || ||  |||||||||||||||||||||||  || |||||||| |||| |||     
T  8666432 tcaagaacatctatttctttctcttttttattcttatcaagcaaatccatagcaacagtaattgcattgttgatctttgcaatttcttgagggga-gaga 8666530  T
Q  117 atcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatctt 216  Q
    |||| ||||||| ||||||||||||| |  |||||||||||||||||||||||||||||| ||| ||||||||||||| | | ||| |||||||||||||    
T  8666531 atcagattaacatccttcttctttaaagccttcttcatattgtaaacacaagaatctaattcacacattaccttggcccttcttaaaaattgcatatctt 8666630  T
Q  217 ccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaacctttctttgccattagtaatggcgatc 299  Q
    |||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| |||| || |||| ||||    
T  8666631 ccacatggtatttctcagcttctttaatcattttttcaatgtcgaacattgacaacctttctttgtcattggttatggtgatc 8666713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 8672224 - 8671933
Alignment:
Q  17 tcaagaacatctatttctttctttttgttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagc 116  Q
    |||||||||||||||||||||| ||| |||||| |||||||||||| || ||  |||||||||||||||||||||||  || |||||||| |||| |||     
T  8672224 tcaagaacatctatttctttctcttttttattcatatcaagcaaatccatagcaacagtaattgcattgttgatctttgcaatttcttgagggga-gaga 8672126  T
Q  117 atcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatctt 216  Q
    |||| |||||||   ||||||| ||| |  |||||||||||||||||||||||||||||||||| ||||||||||||| | | ||| |||||||||||||    
T  8672125 atcagattaacattgttcttctctaaagcgttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatctt 8672026  T
Q  217 ccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaacctttctttgccattagtaatggcgatcgcattcatat 309  Q
    ||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||| ||||||   |||||||||| ||| ||||| ||||    
T  8672025 ccacatgatatttctcagcttctttaatcattttttcaatgtcgaacattgacaacctgtctttgttgttagtaatggtgatagcatttatat 8671933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 8653454 - 8653741
Alignment:
Q  17 tcaagaacatctatttctttctttttgttattcttat------caagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatggg 110  Q
    |||||||||||||||||| | | || |||||||||||      | ||||||||||  |  ||| |||||||||||||||||| ||||||||||||| |||    
T  8653454 tcaagaacatctatttctatatgttggttattcttattcatttcgagcaaattcatggcaacaataattgcattgttgatctgctcactttcttgagggg 8653553  T
Q  111 aagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgca 210  Q
    | ||| || | || |||| ||||| | || || | | |||| |||||||||||||||||||| ||||| || ||||| ||||||||||  || |||| ||    
T  8653554 a-gaggattagatcaacatccttcatattcaaagcactctttatattgtaaacacaagaatccaatgcgcttattactttggccttcctcaaaaatttca 8653652  T
Q  211 tatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaacctttctttgccattagtaatggcgatc 299  Q
    ||||||||||| |||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||||||  ||||||| |||| ||||    
T  8653653 tatcttccacacggtatttctcagcttcttcaatctttttttcaatttcaaactttgacaacctttctttctcattagtgatggtgatc 8653741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 280
Target Start/End: Original strand, 8658437 - 8658638
Alignment:
Q  78 ttgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaatg 177  Q
    |||||||||||||||| || ||||||  | |||| |||  | ||||||||| ||||||| ||||| | ||||||||  |||||||||||| |||| ||      
T  8658437 ttgcattgttgatcttttccctttctccacggga-gaggtttaaattaacatccttcttttttaacgcattcttcactttgtaaacacaataatccaaat 8658535  T
Q  178 cactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaacctttc 277  Q
    || ||||||| |||||||||| ||| |||| | ||||||||| | ||||| |||||||||||| ||||||||| | |||||| || |||||||| |||||    
T  8658536 cattcattactttggccttccttaaaaattccttatcttccatacggtatctctcagcttcttcaatcattttgttaatttcaaatgttgacaatctttc 8658635  T
Q  278 ttt 280  Q
    |||    
T  8658636 ttt 8658638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 280
Target Start/End: Original strand, 1300495 - 1300733
Alignment:
Q  41 ttgttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttcttt 140  Q
    ||||||||||||||||||||  |    | ||| |||||||||||||||||||| || ||||||| | |||| |||  | ||||||||| |||||||||||    
T  1300495 ttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacggga-gagatttaaattaacatccttcttcttt 1300593  T
Q  141 aatgtattcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctt 240  Q
    || | ||||||||  |||||||||||| |||| ||  || |||||||  ||||||||  ||| || | | |||||||||  |||||||||||||| |||     
T  1300594 aaggcattcttcactttgtaaacacaataatccaaatcattcattactgtggccttctttaaaaacttcttatcttccatgtggtatttctcagcatctg 1300693  T
Q  241 taatcattttttcaatttctaacgttgacaacctttcttt 280  Q
     ||||||||| | |||||| || |||||||| ||||||||    
T  1300694 caatcattttgttaatttcaaatgttgacaatctttcttt 1300733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 8653229 - 8653405
Alignment:
Q  44 ttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaat 143  Q
    ||||||||||||||||||||||  |   ||  |||||||||||||||||| |||||||||||| |||| ||  || | ||||||| ||||| | || ||     
T  8653229 ttattcttatcaagcaaattcatggccccaaaaattgcattgttgatcttttcactttcttgagggga-gatgattagattaacatccttcgtattcaaa 8653327  T
Q  144 gtattcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatcttccaca 221  Q
    | |||| | ||||| | ||| |||||||| ||||||||||||||| ||||||||| ||| |||| |||||||||||||    
T  8653328 gcattcgttatattcttaacgcaagaatccaatgcactcattaccgtggccttccttaaaaatttcatatcttccaca 8653405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 289
Target Start/End: Original strand, 3146392 - 3146551
Alignment:
Q  130 ccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatcttccacatggtattt 229  Q
    ||||||||||||| | ||| ||||| |||||||||||| ||||||||||| ||||||| |||||||||| ||  ||||    ||| || ||| |||| ||    
T  3146392 ccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttccttagaaatttttcatcctcaacacggtaatt 3146491  T
Q  230 ctcagcttctttaatcattttttcaatttctaacgttgacaacctttctttgccattagt 289  Q
     ||||||||||| |||||||||  |||||||   | |||||| ||||||||| |||||||    
T  3146492 ttcagcttctttgatcatttttataatttcttgggatgacaatctttctttgtcattagt 3146551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 9337046 - 9336755
Alignment:
Q  17 tcaagaacatctatttctttctttttgttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagc 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||||||| | |  |||     
T  9337046 tcaagaacatctatttctttctctttgttattcttatcaagcaaattcatagcaacagtaattgcattgttgatcttctcaatttcttgaggcgt-gaga 9336948  T
Q  117 atcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatctt 216  Q
    |||| |||||||   ||||||||||| |  |||||||||||||||||||||||||||||||||| ||||||||||||| | | ||| |||||||||||||    
T  9336947 atcagattaacattgttcttctttaaagcgttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatctt 9336848  T
Q  217 ccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaacctttctttgccattagtaatggcgatcgcattcatat 309  Q
    ||||||| |||||| ||||||||||||||||||||||||| || ||| ||||||||||||||||| |||||||||||| ||| || |||||||    
T  9336847 ccacatgatatttcgcagcttctttaatcattttttcaatgtcgaacattgacaacctttctttgtcattagtaatggtgattgcgttcatat 9336755  T

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Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 16658672 - 16658413
Alignment:
Q  17 tcaagaacatctatttctttctttttgttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagc 116  Q
    |||||||||||| |||| || | |||||||||||||||||||||| |    |  ||||||||||||||||||||||||||| ||||||||  ||| ||||    
T  16658672 tcaagaacatctgtttcattttgtttgttattcttatcaagcaaacttgtggccacagtaattgcattgttgatcttctcaatttcttgagagga-gagc 16658574  T
Q  117 atcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatctt 216  Q
     | ||||| ||| | |||||   ||| | |||||||||||||||||||||| |||| |||||| ||||||||||||||||   ||| |||| | ||||||    
T  16658573 tttaaattcacatctttctt---taaagcattcttcatattgtaaacacaataatccaatgcattcattaccttggccttttgtaaaaatttcttatctt 16658477  T
Q  217 ccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaacctttcttt 280  Q
    |||| |||||| |||||||||||| ||||||||||| |||||| || |||||||| ||||||||    
T  16658476 ccacgtggtatctctcagcttcttcaatcatttttttaatttccaaggttgacaatctttcttt 16658413  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 16662998 - 16662909
Alignment:
Q  170 atctaatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttc 259  Q
    |||||||||| |||||||||||||||||| || ||||| |  ||||||  ||||||| | || |||||||| ||||| ||||||||||||    
T  16662998 atctaatgcattcattaccttggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttc 16662909  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 28910518 - 28910632
Alignment:
Q  146 attcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatc 245  Q
    ||||||||| |||||||||||| ||| ||||||| ||||||| |||||||| | ||  ||||    |||||| |||||||| |||||||||||||| |||    
T  28910518 attcttcatcttgtaaacacaataatgtaatgcattcattacattggcctttcttagaaatttttcatcttctacatggtaattctcagcttctttgatc 28910617  T
Q  246 attttttcaatttct 260  Q
    |||| || |||||||    
T  28910618 atttcttgaatttct 28910632  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 53416997 - 53416947
Alignment:
Q  231 tcagcttctttaatcattttttcaatttctaacgttgacaacctttctttg 281  Q
    |||||||||| ||||||||||||||| || |  ||||||||||||||||||    
T  53416997 tcagcttcttcaatcattttttcaatatcaattgttgacaacctttctttg 53416947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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