View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16635_high_16 (Length: 287)
Name: NF16635_high_16
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16635_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 5823184 - 5822919
Alignment:
| Q |
8 |
tgagatgaatatcaatggtgaaaccgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtggaa |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
5823184 |
tgagaagaatatcaatggtgaaaccgagtatcaatgccgaacatctgaagttatggtggagagaatagcagcatacatagagacagacgaatgtgtagaa |
5823085 |
T |
|
| Q |
108 |
gcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823084 |
gcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagt |
5822985 |
T |
|
| Q |
208 |
gtcccaatattgttgaccttttcttcaatttggctgctggagaaggtaacaattgtttgttaatgc |
273 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822984 |
gtcccaatattgttgaccttttctttaatttggctgctggagaaggtaacaattgtttgttaatgc |
5822919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 5828693 - 5828958
Alignment:
| Q |
8 |
tgagatgaatatcaatggtgaaaccgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtggaa |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5828693 |
tgagaagaatatcaatggtgaaaccgagtatcaatgccgaacatctgaagttatggtggagagaatagcagcatacatagagacagatcaatgtgtggaa |
5828792 |
T |
|
| Q |
108 |
gcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5828793 |
gcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagt |
5828892 |
T |
|
| Q |
208 |
gtcccaatattgttgaccttttcttcaatttggctgctggagaaggtaacaattgtttgttaatgc |
273 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
5828893 |
gtcccaatattgttgaccttttctttaatttggctgctggagaaggtaagacttgtttgttaatgc |
5828958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 5833051 - 5832814
Alignment:
| Q |
19 |
tcaatggtgaaaccgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtggaagcatgtggtgt |
118 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5833051 |
tcaatggtgaaattgagtatcaatgtagaacatctgaagttatagtggagagaatttcagagtacatagagacagatcaatgtgtggaagcatgtggtgt |
5832952 |
T |
|
| Q |
119 |
tgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagtgtcccaatatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||| || ||| |||||| | ||||| || || ||| |
|
|
| T |
5832951 |
tgatagaagttctgttggtatttcatctgatgctttctttgagccacaattcaccggcaaactttgctcaccagcttgttacaaaaagtgccctaacatt |
5832852 |
T |
|
| Q |
219 |
gttgaccttttcttcaatttggctgctggagaaggtaa |
256 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
5832851 |
gttgaccttttcttcaatatggctgctggagagggtaa |
5832814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 256
Target Start/End: Complemental strand, 24038658 - 24038434
Alignment:
| Q |
32 |
cgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtggaagcatgtggtgttgatagaagttct |
131 |
Q |
| |
|
||||||||||||| | ||||| ||||| || ||||| |||| || | ||||||||||||||| ||||||||| |||||||||| ||||| || | || | |
|
|
| T |
24038658 |
cgagtatcaatgtaggacatcagaagtagtgttggagcgaatggcgggatacatagagacagatcaatgtgtgaaagcatgtggagttgaaaggaatttt |
24038559 |
T |
|
| Q |
132 |
gttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagtgtcccaatattgttgaccttttct |
231 |
Q |
| |
|
|| || ||||| || ||||| || ||||||| | |||||| ||| |||||||| ||||||||| | || || ||||||||||||||||||| || |
|
|
| T |
24038558 |
gtcggaatttcttccgatgcattgcttgagccacaattcacagccaaactttgttcatcatcttgttaccaaaattgccccaatattgttgacctttact |
24038459 |
T |
|
| Q |
232 |
tcaatttggctgctggagaaggtaa |
256 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
24038458 |
tcaatttggctgctggggaaggtaa |
24038434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University