View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16635_high_25 (Length: 221)
Name: NF16635_high_25
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16635_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 3090863 - 3091065
Alignment:
| Q |
1 |
ctcctgctcaacgattcatttctgaagatggtgttattaattcaagagctcgtgttctaggtggtggaagttgtttgaatgccggcttctatactcgtgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3090863 |
ctcctgctcaacgattcatttctgaagatggtgttattaattcaagagctcgtgttctaggtggtggaagttgtttgaatgccggcttctatactcgtgc |
3090962 |
T |
|
| Q |
101 |
aagccctcgctacgtaaggtatgtaacacaaaaataaaccattctctcaagacggtcaggagtaagtctactatggtcacaactctagatctaatgattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3090963 |
aagccctcgctacgtaaggtatgtaacacaaaaataaaccattctctcaagacggtcaggagtaagtctactatggtcacaactctagatctaatgattt |
3091062 |
T |
|
| Q |
201 |
ata |
203 |
Q |
| |
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||| |
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|
| T |
3091063 |
ata |
3091065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 3082507 - 3082653
Alignment:
| Q |
1 |
ctcctgctcaacgattcatttctgaagatggtgttattaattcaagagctcgtgttctaggtggtggaagttgtttgaatgccggcttctatactcgtgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
3082507 |
ctcctgctcaacgattcatttctgaagatggtgttattaattcaagagctcgtgttctaggtggtggaagttgtttgaatgctggcttctacactcgtgc |
3082606 |
T |
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| Q |
101 |
aagccctcgctacgtaaggtatgtaacacaaaaataaaccattctctcaag |
151 |
Q |
| |
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|||||||||||| ||||| ||||||||||||||||| ||||| ||||| |
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| T |
3082607 |
aagccctcgctatgtaag----gtaacacaaaaataaactattctttcaag |
3082653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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