View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16635_high_3 (Length: 446)
Name: NF16635_high_3
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16635_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 203 - 431
Target Start/End: Original strand, 5604108 - 5604333
Alignment:
| Q |
203 |
tgacctggaaaggaatttgaacagctgtgaaaattaaatttgcgttgttttgatcttaacatactataatgagactagtgttactttaacctatttttcc |
302 |
Q |
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| T |
5604108 |
tgacctggaaaggaatttgaacagctgtgaaaattaaatttgcgttgttttgatcttaacatactataatgagactagtgttactttaacctatttttcc |
5604207 |
T |
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| Q |
303 |
aacactatggtnnnnnnnnnnnnntcttaagcatcctttccattataaaattatagtagtaagaaaaatacttaaatatatttttaatccctataaaatt |
402 |
Q |
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| T |
5604208 |
aacactacggt---aaaaaaataatcttacgcatcctttccattataaaattatattagtaagaaaaatacttaaatatatttttaatccttataaaatt |
5604304 |
T |
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| Q |
403 |
aacaatttccagctttgtagggattatag |
431 |
Q |
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| T |
5604305 |
aacaatttctagctttgtagggattatag |
5604333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 5603918 - 5604068
Alignment:
| Q |
13 |
gagaaggtcgtcaatatagttaccaaattttctgtaataatacattgaacagatactctgaatactttaataacttttccattaacgtattcatcaaatt |
112 |
Q |
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| T |
5603918 |
gagaatgtcgtcaatatagttaccaaattttatgtaataatacattgaacagatactctgaatactttaataacttttccattaacgtattcatcaaatt |
5604017 |
T |
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| Q |
113 |
aagccagtcacaaccttaactggcaaaataattaagtttatacttataata |
163 |
Q |
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| T |
5604018 |
aagccagtcacaaccttaattggcaaaaaaattaagtttatacttataata |
5604068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 404
Target Start/End: Original strand, 54185487 - 54185517
Alignment:
| Q |
374 |
ttaaatatatttttaatccctataaaattaa |
404 |
Q |
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| T |
54185487 |
ttaaatatatttttaatccctataaaattaa |
54185517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 403
Target Start/End: Complemental strand, 32798713 - 32798684
Alignment:
| Q |
374 |
ttaaatatatttttaatccctataaaatta |
403 |
Q |
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| T |
32798713 |
ttaaatatatttttaatccctataaaatta |
32798684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 403
Target Start/End: Original strand, 43187935 - 43187972
Alignment:
| Q |
366 |
aaaaatacttaaatatatttttaatccctataaaatta |
403 |
Q |
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| T |
43187935 |
aaaaaaacttaaatatatttttagtccctataaaatta |
43187972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 410
Target Start/End: Original strand, 35990723 - 35990759
Alignment:
| Q |
374 |
ttaaatatatttttaatccctataaaattaacaattt |
410 |
Q |
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| T |
35990723 |
ttaaatatgtttttaatccctataaaatttacaattt |
35990759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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