View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16635_high_9 (Length: 361)

Name: NF16635_high_9
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16635_high_9
NF16635_high_9
[»] chr1 (18 HSPs)
chr1 (157-224)||(11333715-11333782)
chr1 (157-224)||(11491736-11491803)
chr1 (173-225)||(50119022-50119074)
chr1 (189-247)||(23233978-23234037)
chr1 (190-252)||(18534023-18534086)
chr1 (157-220)||(34562739-34562802)
chr1 (173-220)||(47469041-47469088)
chr1 (173-247)||(51942322-51942397)
chr1 (190-252)||(10248415-10248477)
chr1 (158-220)||(36666529-36666591)
chr1 (156-247)||(3560331-3560424)
chr1 (156-247)||(6702603-6702696)
chr1 (163-220)||(7000920-7000977)
chr1 (156-224)||(7180564-7180633)
chr1 (180-225)||(11860092-11860137)
chr1 (180-217)||(24499783-24499820)
chr1 (189-252)||(40520305-40520369)
chr1 (189-225)||(41998398-41998434)
[»] chr5 (18 HSPs)
chr5 (308-346)||(42549646-42549684)
chr5 (190-247)||(16745108-16745166)
chr5 (180-252)||(32389609-32389682)
chr5 (173-225)||(8571843-8571895)
chr5 (173-220)||(4068037-4068084)
chr5 (173-220)||(7171783-7171830)
chr5 (189-247)||(26912860-26912919)
chr5 (156-247)||(36735898-36735992)
chr5 (183-220)||(3198382-3198419)
chr5 (156-220)||(4238258-4238323)
chr5 (156-247)||(6558828-6558921)
chr5 (156-247)||(11897275-11897368)
chr5 (173-234)||(17693154-17693215)
chr5 (159-220)||(20501449-20501510)
chr5 (164-247)||(22646700-22646785)
chr5 (156-247)||(39886162-39886255)
chr5 (180-220)||(14804957-14804997)
chr5 (180-220)||(34208429-34208469)
[»] chr3 (18 HSPs)
chr3 (178-247)||(52309083-52309153)
chr3 (173-225)||(46844939-46844991)
chr3 (190-263)||(42496355-42496428)
chr3 (156-263)||(11234453-11234562)
chr3 (190-247)||(54021320-54021377)
chr3 (189-240)||(10828504-10828556)
chr3 (190-237)||(32429784-32429832)
chr3 (156-263)||(44685119-44685227)
chr3 (173-220)||(19222554-19222601)
chr3 (173-220)||(24303445-24303492)
chr3 (157-220)||(47098571-47098634)
chr3 (173-224)||(49443391-49443442)
chr3 (173-220)||(53203879-53203926)
chr3 (173-224)||(54769798-54769849)
chr3 (180-252)||(29098714-29098787)
chr3 (157-225)||(4227696-4227764)
chr3 (173-247)||(28689639-28689715)
chr3 (180-220)||(49983683-49983723)
[»] chr6 (7 HSPs)
chr6 (156-247)||(22997363-22997456)
chr6 (156-247)||(23790945-23791038)
chr6 (156-247)||(19892226-19892319)
chr6 (156-270)||(26347408-26347524)
chr6 (159-247)||(5694941-5695030)
chr6 (173-218)||(29646516-29646561)
chr6 (173-220)||(3709914-3709962)
[»] chr4 (25 HSPs)
chr4 (157-222)||(29256940-29257005)
chr4 (154-252)||(44568168-44568267)
chr4 (158-247)||(52798305-52798395)
chr4 (156-247)||(46998318-46998411)
chr4 (157-225)||(2629629-2629697)
chr4 (156-228)||(43905757-43905829)
chr4 (197-239)||(38433343-38433386)
chr4 (174-247)||(45126159-45126234)
chr4 (173-220)||(49264581-49264628)
chr4 (173-263)||(51777855-51777946)
chr4 (173-220)||(51890852-51890899)
chr4 (173-219)||(9764991-9765037)
chr4 (178-220)||(23695139-23695181)
chr4 (190-247)||(40051649-40051707)
chr4 (191-247)||(2771063-2771120)
chr4 (180-225)||(12625879-12625924)
chr4 (156-247)||(39696288-39696380)
chr4 (180-220)||(6170944-6170984)
chr4 (156-200)||(12763681-12763725)
chr4 (190-237)||(34932532-34932580)
chr4 (173-225)||(38848088-38848140)
chr4 (197-225)||(40666838-40666866)
chr4 (207-247)||(46582342-46582382)
chr4 (190-245)||(49056804-49056860)
chr4 (189-237)||(54215799-54215847)
[»] chr2 (15 HSPs)
chr2 (173-247)||(40363039-40363114)
chr2 (156-220)||(29449503-29449568)
chr2 (173-225)||(3596300-3596352)
chr2 (156-247)||(4659435-4659527)
chr2 (173-247)||(30390336-30390412)
chr2 (190-244)||(13773430-13773485)
chr2 (189-247)||(17777147-17777206)
chr2 (190-240)||(34149665-34149716)
chr2 (156-247)||(28153092-28153185)
chr2 (190-247)||(44021101-44021158)
chr2 (156-220)||(3287007-3287071)
chr2 (156-247)||(4878236-4878328)
chr2 (204-247)||(30392831-30392875)
chr2 (180-220)||(44558057-44558097)
chr2 (180-247)||(45523401-45523469)
[»] chr7 (15 HSPs)
chr7 (190-247)||(18223702-18223760)
chr7 (190-247)||(31769497-31769555)
chr7 (156-216)||(49089559-49089619)
chr7 (173-220)||(12935795-12935842)
chr7 (190-247)||(9497993-9498051)
chr7 (190-247)||(10244874-10244932)
chr7 (190-247)||(10690874-10690932)
chr7 (190-247)||(15106676-15106734)
chr7 (157-219)||(40518841-40518903)
chr7 (195-247)||(3392494-3392547)
chr7 (156-247)||(48719826-48719919)
chr7 (180-224)||(7778971-7779015)
chr7 (156-247)||(21066913-21067005)
chr7 (173-225)||(45284787-45284839)
chr7 (180-247)||(47194399-47194467)
[»] scaffold0445 (1 HSPs)
scaffold0445 (156-247)||(3964-4057)
[»] scaffold0154 (1 HSPs)
scaffold0154 (163-220)||(28779-28836)
[»] chr8 (19 HSPs)
chr8 (167-220)||(5683809-5683862)
chr8 (154-252)||(5332938-5333038)
chr8 (156-247)||(22274562-22274654)
chr8 (156-247)||(24458344-24458436)
chr8 (173-225)||(25824870-25824922)
chr8 (180-220)||(38283179-38283219)
chr8 (173-247)||(42035363-42035439)
chr8 (173-220)||(12770423-12770470)
chr8 (173-220)||(25812177-25812224)
chr8 (189-247)||(39362292-39362351)
chr8 (156-252)||(13647407-13647505)
chr8 (156-252)||(13747832-13747930)
chr8 (189-223)||(32191860-32191894)
chr8 (154-223)||(37669738-37669808)
chr8 (178-247)||(39712264-39712334)
chr8 (156-247)||(38344076-38344169)
chr8 (180-220)||(481066-481106)
chr8 (156-220)||(2114938-2115002)
chr8 (156-247)||(31712576-31712668)
[»] scaffold0006 (1 HSPs)
scaffold0006 (189-221)||(60304-60336)


Alignment Details
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 11333782 - 11333715
Alignment:
Q  157 agtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccg 224  Q
    ||||||||| ||||| |||||| |||||||| |||||||||||| ||||||| |||||||||||||||    
T  11333782 agtagtctagtgactagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaactccg 11333715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 11491803 - 11491736
Alignment:
Q  157 agtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccg 224  Q
    ||||||||| ||||| |||||| |||||||| |||||||||||| ||||||| |||||||||||||||    
T  11491803 agtagtctagtgactagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaactccg 11491736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 50119074 - 50119022
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccga 225  Q
    |||||| |||||||| |||||||||||| ||||||| ||||||||||||||||    
T  50119074 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaactccga 50119022  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 23234037 - 23233978
Alignment:
Q  189 atgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||||||||||||||||||||||||||||| ||||  ||| |||||||||| ||||||    
T  23234037 atgtggagaagtagggtgtctggggttcgaaccccgacccctgcatataatatgcaatat 23233978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 18534086 - 18534023
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatatatcta 252  Q
    ||||||||||| | ||||| ||||||||||| |||| ||||||||||||||| |||||| ||||    
T  18534086 tgtggagaagtggagtgtccggggttcgaaccccgactcctacatataatatgcaatatctcta 18534023  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 34562739 - 34562802
Alignment:
Q  157 agtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||| |||||||| | |||||| |||||||| || ||||||||| ||||||| |||||||||||    
T  34562739 agtaatctaatgattagagctcacacaattaaatatggagaagtggggtgtccggggttcgaac 34562802  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 47469041 - 47469088
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||| |||||||| |||||||||||| ||||||| |||||||||||    
T  47469041 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaac 47469088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 51942397 - 51942322
Alignment:
Q  173 gagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccgatcctacatataatatacaatat 247  Q
    |||||| |||||||| || |||||||||| ||||||| ||||||||||| |||| |||  ||||||||| ||||||    
T  51942397 gagctcacacaattaaattgtggagaagtggggtgtccggggttcgaaccccgaccctgtatataatatgcaatat 51942322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 10248415 - 10248477
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactccgatcctacatataatatacaatatatcta 252  Q
    ||||||||||| | ||||| ||||||| ||| |||| ||| ||||||||||||||||| ||||    
T  10248415 tgtggagaagtggagtgtccggggttcaaaccccgagcctgcatataatatacaatatctcta 10248477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 36666529 - 36666591
Alignment:
Q  158 gtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||| |||||| || |||||| ||||||||  ||||||||||| ||||||| |||||||||||    
T  36666529 gtagcctaatggctagagctcacacaattaattgtggagaagtggggtgtccggggttcgaac 36666591  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 3560331 - 3560424
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaatat 247  Q
    |||||||||| || || |||||| |||||||| || |||||||||| | || ||||||||||||||||| |  ||| ||||||||||| |||||    
T  3560331 aagtagtctagtggctagagctcacacaattaaattgtggagaagtggagtatctggggttcgaactccagcccctgcatataatatataatat 3560424  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 6702696 - 6702603
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||| |||||| || |||||| |||||||  || ||| |||||| | ||||||||||||||||| |||| |||| |||||||||| ||||||    
T  6702696 aagtagcctaatggctagagctcacacaatttaattgtgaagaagtggagtgtctggggttcgaaccccgactcctgcatataatatgcaatat 6702603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 7000920 - 7000977
Alignment:
Q  163 ctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||||||  ||||| |||||||| |||||||||||| ||||||| || ||||||||    
T  7000920 ctaatgactgaagctcacacaattaaatgtggagaagtggggtgtccggagttcgaac 7000977  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 7180564 - 7180633
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccg 224  Q
    |||||| ||| ||||| |||||| |||||||  || |||||||||| ||||||| |||||||||||||||    
T  7180564 aagtagcctagtgactagagctcacacaatttaattgtggagaagtggggtgtccggggttcgaactccg 7180633  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 11860137 - 11860092
Alignment:
Q  180 cacaattacatgtggagaagtagggtgtctggggttcgaactccga 225  Q
    |||||||| |||||||||||| ||||||| ||||||||||| ||||    
T  11860137 cacaattaaatgtggagaagtggggtgtccggggttcgaaccccga 11860092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 24499820 - 24499783
Alignment:
Q  180 cacaattacatgtggagaagtagggtgtctggggttcg 217  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  24499820 cacaattaaatgtggagaagtagggtgtccggggttcg 24499783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 40520369 - 40520305
Alignment:
Q  189 atgtggagaagtagggtgtctggggttcgaactccgat-cctacatataatatacaatatatcta 252  Q
    |||||||||||||||||||| ||||||| |||| | || ||| |||||||||| |||||| ||||    
T  40520369 atgtggagaagtagggtgtccggggttcaaactacaatccctgcatataatatgcaatatttcta 40520305  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 41998434 - 41998398
Alignment:
Q  189 atgtggagaagtagggtgtctggggttcgaactccga 225  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  41998434 atgtggagaagtagggtgtctagggttcgaaccccga 41998398  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 42549684 - 42549646
Alignment:
Q  308 aaaataacatcaaggtcaagttgaatgacaaatagttag 346  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42549684 aaaataacatcaaggtcaagttgaatgacaaatagttag 42549646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 16745166 - 16745108
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    ||||||||||| |||||||||| |||||||||||||  |||||||||||||| ||||||    
T  16745166 tgtggagaagtggggtgtctggagttcgaactccgacccctacatataatatgcaatat 16745108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 32389609 - 32389682
Alignment:
Q  180 cacaattacatgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatatatcta 252  Q
    |||||||| ||| |||||||| ||||||||||  || ||||||||| ||||||||||||||| |||||| ||||    
T  32389609 cacaattaaatgaggagaagtggggtgtctggaatttgaactccgactcctacatataatatgcaatatctcta 32389682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 8571895 - 8571843
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccga 225  Q
    |||||| |||||||| |||||||||||||||||||  ||||||||||| ||||    
T  8571895 gagctcacacaattaaatgtggagaagtagggtgttcggggttcgaaccccga 8571843  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 4068084 - 4068037
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||| |||||||| |||||||||||| ||||||| |||||||||||    
T  4068084 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaac 4068037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 7171830 - 7171783
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||| ||||||||  ||||||||||| |||||||||||||||||||    
T  7171830 gagctcacacaattaattgtggagaagtggggtgtctggggttcgaac 7171783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 26912919 - 26912860
Alignment:
Q  189 atgtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaatat 247  Q
    ||||||||||||||||||| |||||||||||| || |  |||||||||||||| ||||||    
T  26912919 atgtggagaagtagggtgtttggggttcgaaccccggcccctacatataatatgcaatat 26912860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 36735992 - 36735898
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat--gtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||| ||| || || |||||| |||||||| ||  |||||||||| | |||||| |||||||||||||||  |||||||||||||| ||||||    
T  36735992 aagtagcctagtggctagagctcacacaattaaatttgtggagaagtggagtgtctagggttcgaactccgacccctacatataatatgcaatat 36735898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 3198419 - 3198382
Alignment:
Q  183 aattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  3198419 aattaaatgtggagaagtagggtgtccggggttcgaac 3198382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 4238258 - 4238323
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacatgtggagaagt-agggtgtctggggttcgaac 220  Q
    |||||| ||||||||| |||||| |||||||| ||||||||||||  ||| ||| |||||||||||    
T  4238258 aagtagcctaatgactagagctcacacaattaaatgtggagaagtgggggcgtccggggttcgaac 4238323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 6558921 - 6558828
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||| ||| ||||| |||||| |||||||  || |||||||||||||||||| || |||||||| ||||  ||| |||||||||| ||||||    
T  6558921 aagtagcctagtgactagagctcacacaatttaattgtggagaagtagggtgtccggagttcgaaccccgacccctgcatataatatgcaatat 6558828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 11897368 - 11897275
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||||||| || || |||||| |||||||  || |||||||||| | ||||| ||||||||||| |||| |||| |||||||||| ||||||    
T  11897368 aagtagtctagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgcaatat 11897275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 17693154 - 17693215
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccgatcctacata 234  Q
    |||||| |||| ||| |||| |||||||  ||||||||||||||||||||||| ||| ||||    
T  17693154 gagctcacacatttagatgtagagaagtgcggtgtctggggttcgaactccgaccctgcata 17693215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 20501510 - 20501449
Alignment:
Q  159 tagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    ||||||| ||||| || ||| |||||||| |||||||||||| ||||||||| | |||||||    
T  20501510 tagtctagtgactggaactcgcacaattaaatgtggagaagttgggtgtctgagtttcgaac 20501449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 22646785 - 22646700
Alignment:
Q  164 taatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    ||||||||  ||||| |||||||| || |||||||||| | |||| |||||||||||| |||| |||||||||||| |||| ||||    
T  22646785 taatgactaaagctcacacaattaaattgtggagaagtggagtgtttggggttcgaaccccgattcctacatataacatacgatat 22646700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 39886162 - 39886255
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaatat 247  Q
    |||||||||| || || |||||| |||||||  || |||||||||| | ||||| ||||||||||| || | ||||||||||||||| ||||||    
T  39886162 aagtagtctagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccagctcctacatataatatgcaatat 39886255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 14804957 - 14804997
Alignment:
Q  180 cacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||||| |||||||||||| ||||||| |||||||||||    
T  14804957 cacaattaaatgtggagaagtggggtgtccggggttcgaac 14804997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 34208469 - 34208429
Alignment:
Q  180 cacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    ||||||||  ||||||||||| |||||||||||||||||||    
T  34208469 cacaattaattgtggagaagtggggtgtctggggttcgaac 34208429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 52309083 - 52309153
Alignment:
Q  178 ctcacaattacatgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||||||| |||||||||||| ||||||||||||||||||| |||| |||| |||||| ||| ||||||    
T  52309083 ctcacaattaaatgtggagaagtggggtgtctggggttcgaaccccgactcctgcatatagtatgcaatat 52309153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 46844939 - 46844991
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccga 225  Q
    |||||| |||| ||| |||||||||||||||||||| ||||||||||||||||    
T  46844939 gagctcacacatttaaatgtggagaagtagggtgtccggggttcgaactccga 46844991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 42496355 - 42496428
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatatatctattaactaagct 263  Q
    |||||||||||||||||| |||||||||||| ||||  |||||||||||||| |||||| ||||  |||||||||    
T  42496355 tgtggagaagtagggtgtttggggttcgaac-ccgacccctacatataatatgcaatatttctaccaactaagct 42496428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 263
Target Start/End: Complemental strand, 11234562 - 11234453
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaatt-acatgtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaatatatctat 253  Q
    ||||||||||||| || |||||| ||||||| |  ||||||||||| |  |||||||||||||||| || | |||| ||||||| ||||||||| ||||     
T  11234562 aagtagtctaatggctagagctcacacaatttatttgtggagaagtggattgtctggggttcgaaccccagctcctgcatataaaatacaatatctctac 11234463  T
Q  254 taactaagct 263  Q
    ||||| ||||    
T  11234462 taactgagct 11234453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 54021320 - 54021377
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactccgatcctacatataatatacaatat 247  Q
    ||||||||||  |||||||||||||||||||||||  ||| |||||||||| ||||||    
T  54021320 tgtggagaagcggggtgtctggggttcgaactccggccctgcatataatatgcaatat 54021377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 10828556 - 10828504
Alignment:
Q  189 atgtggagaagtagggtgtctggggttcgaactccgatc-ctacatataatat 240  Q
    |||||||||||| ||||||||||||||||||||||| || || ||||||||||    
T  10828556 atgtggagaagtggggtgtctggggttcgaactccggtctctgcatataatat 10828504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 32429832 - 32429784
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactccgatc-ctacatataa 237  Q
    ||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  32429832 tgtggagaagtggggtgtctggggttcgaactccgacctctacatataa 32429784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 263
Target Start/End: Original strand, 44685119 - 44685227
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaa-ctccgatcctacatataatatacaatatatctatt 254  Q
    |||||||||| || || || ||| ||||||||  ||||||||||| |||||| ||||||||||| ||| |  |||| ||||||||| |||||| ||||      
T  44685119 aagtagtctagtggctagaactcacacaattaattgtggagaagtggggtgtttggggttcgaatctcagcccctatatataatatgcaatatctctacc 44685218  T
Q  255 aactaagct 263  Q
    |||||||||    
T  44685219 aactaagct 44685227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 19222554 - 19222601
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||| |||||||| |||||||||||| ||||||| |||||||||||    
T  19222554 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaac 19222601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 24303492 - 24303445
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||| |||||||| |||||||||||| ||||||| |||||||||||    
T  24303492 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaac 24303445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 47098634 - 47098571
Alignment:
Q  157 agtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    ||||||||| || || |||||| || ||||| ||||||||||||  ||||||||||||||||||    
T  47098634 agtagtctagtggctggagctcacataattaaatgtggagaagtgaggtgtctggggttcgaac 47098571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 49443391 - 49443442
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccg 224  Q
    |||||| |||| ||| |||||||||||| ||||||| |||||||||||||||    
T  49443391 gagctcacacatttaaatgtggagaagtggggtgtccggggttcgaactccg 49443442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 53203926 - 53203879
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||| |||||||| |||||||||||| ||||||||||| |||||||    
T  53203926 gagctcacacaattaaatgtggagaagttgggtgtctgggattcgaac 53203879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 54769798 - 54769849
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccg 224  Q
    |||||| |||||||| |||||||||||| ||||||| | |||||||||||||    
T  54769798 gagctcacacaattaaatgtggagaagtggggtgtccgtggttcgaactccg 54769849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 29098787 - 29098714
Alignment:
Q  180 cacaattacatgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatatatcta 252  Q
    |||||||| || ||||||| | ||||||| ||||||||||| ||||  ||| ||||||||||||||||| ||||    
T  29098787 cacaattaaatatggagaaatggggtgtccggggttcgaaccccgacccctgcatataatatacaatatctcta 29098714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 4227696 - 4227764
Alignment:
Q  157 agtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccga 225  Q
    |||||||||||| || |||||| ||||||||  | ||||||||| ||||||| || |||||||| ||||    
T  4227696 agtagtctaatggctagagctcacacaattaattatggagaagtggggtgtccggagttcgaaccccga 4227764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 28689639 - 28689715
Alignment:
Q  173 gagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||| |||||||| || |||||||||| | ||||| ||||||||||| |||| |||| |||||||||| ||||||    
T  28689639 gagctcacacaattaaattgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgcaatat 28689715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 49983683 - 49983723
Alignment:
Q  180 cacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    ||||||||  ||||||||||||||||||| |||||||||||    
T  49983683 cacaattaattgtggagaagtagggtgtccggggttcgaac 49983723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 22997456 - 22997363
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||||||| || || |||||| |||||||  || |||||||||||||||||| ||||||||||| ||||  |||||||||||||| ||||||    
T  22997456 aagtagtctagtggctagagctcacacaatttaattgtggagaagtagggtgtccggggttcgaaccccgacccctacatataatattcaatat 22997363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 23790945 - 23791038
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||||||| || || |||||| |||||||  || |||||||||||||||||| ||||||||||| ||||  |||||||||||||| ||||||    
T  23790945 aagtagtctagtggctagagctcacacaatttaattgtggagaagtagggtgtccggggttcgaaccccgacccctacatataatattcaatat 23791038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 19892226 - 19892319
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||| ||| || || ||||||||||||||| || |||||||||| | ||||| ||||||||||| ||||  |||||||||||||| ||||||    
T  19892226 aagtagcctagtggctagagctctcacaattaaattgtggagaagtggagtgtccggggttcgaaccccgacccctacatataatatgcaatat 19892319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 26347524 - 26347408
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccgatccta-catataatatacaatatatctat 253  Q
    |||||||||| || || |||||| |||||||| || |||||||||| | |||||||||||| ||||  ||| || | ||||||||||||||||| ||||     
T  26347524 aagtagtctagtggctagagctcacacaattaaattgtggagaagtggagtgtctggggtttgaacatcgagcccaacatataatatacaatatctctac 26347425  T
Q  254 taactaagcttagttca 270  Q
     |||| |||| ||||||    
T  26347424 caactgagctaagttca 26347408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 5695030 - 5694941
Alignment:
Q  159 tagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||||||| || |||||| |||| ||  |||||||||||| ||||||| | ||||| |||||| |  ||| |||||||||||||||||    
T  5695030 tagtctaatggctggagctcacacattttaatgtggagaagtggggtgtccgaggttcaaactcctacccctgcatataatatacaatat 5694941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 29646516 - 29646561
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcga 218  Q
    |||||| |||||||| |||||||||||| ||||||| |||||||||    
T  29646516 gagctcacacaattaaatgtggagaagtggggtgtccggggttcga 29646561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 3709962 - 3709914
Alignment:
Q  173 gagctctcacaatt-acatgtggagaagtagggtgtctggggttcgaac 220  Q
    ||||||||||| || | |||||||||||| |||||||||||||||||||    
T  3709962 gagctctcacattttaaatgtggagaagtggggtgtctggggttcgaac 3709914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 29256940 - 29257005
Alignment:
Q  157 agtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaactc 222  Q
    ||||||||| ||||  |||||| |||||||| |||||||||||  |||||||||||||||||||||    
T  29256940 agtagtctagtgaccggagctcacacaattaaatgtggagaagcggggtgtctggggttcgaactc 29257005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 44568168 - 44568267
Alignment:
Q  154 ttaagtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatatatcta 252  Q
    |||||||||||| || ||||||||| |||||||| || |||||||||  ||||||| | |||||||| ||||  ||| |||||||||| |||||| ||||    
T  44568168 ttaagtagtctagtggcttgagctcacacaattaaatatggagaagtgaggtgtctcgagttcgaaccccgacccctgcatataatatgcaatatctcta 44568267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 52798395 - 52798305
Alignment:
Q  158 gtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccgatcctacatataatatacaatat 247  Q
    |||||||||||||| |||||| |||||||| || |||||||||| | ||||  ||||||||||| ||||  || |||||||||| ||||||    
T  52798395 gtagtctaatgactagagctcacacaattaaattgtggagaagtggagtgtacggggttcgaaccccgactctgcatataatatgcaatat 52798305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 46998318 - 46998411
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaa-ttacatgtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaatat 247  Q
    ||||||||||||| || |||||| ||||| |||  ||||||||||| | ||||| ||||||||||| || | |||| |||||||||||||||||    
T  46998318 aagtagtctaatggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccggctcctgcatataatatacaatat 46998411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 2629697 - 2629629
Alignment:
Q  157 agtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccga 225  Q
    ||||| |||||| || |||||| |||||||| |||||||||||| ||||||  ||||||||||| ||||    
T  2629697 agtagcctaatggctagagctcacacaattaaatgtggagaagtggggtgttcggggttcgaaccccga 2629629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 43905829 - 43905757
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccgatcc 228  Q
    |||||| ||| || || |||||| |||||||| | |||||||||| ||||||| ||||||||||| |||||||    
T  43905829 aagtagcctagtggctagagctcacacaattaaacgtggagaagtggggtgtccggggttcgaaccccgatcc 43905757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 38433386 - 38433343
Alignment:
Q  197 aagtagggtgtctggggttcgaactccga-tcctacatataata 239  Q
    |||| |||||||||||||||||||||||| ||||||||||||||    
T  38433386 aagtggggtgtctggggttcgaactccgactcctacatataata 38433343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 45126234 - 45126159
Alignment:
Q  174 agctctcacaattacat-gtggagaagtagggtgtctggggttcgaa-ctccgatcctacatataatatacaatat 247  Q
    ||||| |||||||| || |||||||||| | |||||||||||||||| ||| | |||| |||||||||||||||||    
T  45126234 agctcacacaattaaattgtggagaagtggagtgtctggggttcgaacctcagctcctgcatataatatacaatat 45126159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 49264628 - 49264581
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||| |||||||| |||||||||||| ||||||| |||||||||||    
T  49264628 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaac 49264581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 51777946 - 51777855
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccgat-cctacatataatatacaatatatctattaactaagct 263  Q
    |||||| |||| ||| |||||||||||| || |||| || |||||||| ||||| ||| |||||||||| ||||||| ||| ||||| ||||    
T  51777946 gagctcacacatttaaatgtggagaagtgggatgtccggagttcgaaccccgatccctgcatataatatgcaatatagctactaactgagct 51777855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 51890899 - 51890852
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||| |||||||| |||||||||||| ||||||| |||||||||||    
T  51890899 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaac 51890852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 9764991 - 9765037
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaa 219  Q
    |||||| |||| ||| |||||||||||||||||||| ||||||||||    
T  9764991 gagctcacacatttaaatgtggagaagtagggtgtccggggttcgaa 9765037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 23695181 - 23695139
Alignment:
Q  178 ctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||||||| |||||||||||| ||||||| |||||||||||    
T  23695181 ctcacaattaaatgtggagaagtggggtgtccggggttcgaac 23695139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 40051707 - 40051649
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    ||||||||||| ||||||||||||||||||| || |  |||||||||||||| ||||||    
T  40051707 tgtggagaagtggggtgtctggggttcgaacccctacccctacatataatatgcaatat 40051649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 2771120 - 2771063
Alignment:
Q  191 gtggagaagtagggtgtctggggttcgaactccgat-cctacatataatatacaatat 247  Q
    |||||||||||||||||  ||||||||||||||| | ||| |||||||||| ||||||    
T  2771120 gtggagaagtagggtgttcggggttcgaactccggtccctgcatataatatgcaatat 2771063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 12625924 - 12625879
Alignment:
Q  180 cacaattacatgtggagaagtagggtgtctggggttcgaactccga 225  Q
    |||||||| |||||||||||| ||||||| || |||||||||||||    
T  12625924 cacaattaaatgtggagaagtggggtgtccggtgttcgaactccga 12625879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 39696288 - 39696380
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||||||| || || |||||| |||||||  || |||||||||||| ||||  ||||||||||| |||| ||||||||||||||| ||||||    
T  39696288 aagtagtctagtggctagagctcacacaatttaattgtggagaagtagagtgttcggggttcgaac-ccgactcctacatataatatgcaatat 39696380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 6170944 - 6170984
Alignment:
Q  180 cacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||||| |||||||||||||| ||||||| |||||||||    
T  6170944 cacaattaaatgtggagaagtagagtgtctgaggttcgaac 6170984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 12763725 - 12763681
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacatgtggagaagt 200  Q
    |||||||||| ||||| |||||| |||||||| ||||||||||||    
T  12763725 aagtagtctagtgactagagctcacacaattaaatgtggagaagt 12763681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 34932580 - 34932532
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactccga-tcctacatataa 237  Q
    |||||||||||||||||| |||||||||||| ||||  |||||||||||    
T  34932580 tgtggagaagtagggtgtttggggttcgaaccccgacccctacatataa 34932532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 38848088 - 38848140
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccga 225  Q
    |||||| |||| ||| |||||||||||| ||||||| ||||||||||| ||||    
T  38848088 gagctcacacatttaaatgtggagaagtggggtgtccggggttcgaaccccga 38848140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 40666838 - 40666866
Alignment:
Q  197 aagtagggtgtctggggttcgaactccga 225  Q
    |||||||||||||||||||||||||||||    
T  40666838 aagtagggtgtctggggttcgaactccga 40666866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 46582342 - 46582382
Alignment:
Q  207 tctggggttcgaactccgatcctacatataatatacaatat 247  Q
    ||||| |||||||| ||||||||||||||||||| ||||||    
T  46582342 tctggagttcgaaccccgatcctacatataatatgcaatat 46582382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 49056860 - 49056804
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaat 245  Q
    ||||||||||| ||||||| |||||||||||||| | |||| |||||||||| ||||    
T  49056860 tgtggagaagtggggtgtccggggttcgaactccggctcctgcatataatatgcaat 49056804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 54215847 - 54215799
Alignment:
Q  189 atgtggagaagtagggtgtctggggttcgaactccgatcctacatataa 237  Q
    |||||||||||| ||||||||||||||||||| ||   |||||||||||    
T  54215847 atgtggagaagtggggtgtctggggttcgaaccccacccctacatataa 54215799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 40363039 - 40363114
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||| |||||||| || ||||||||||| ||||| ||||||||||| ||||  |||||||||||||| ||||||    
T  40363039 gagctcacacaattaaatatggagaagtagagtgtcgggggttcgaaccccgacccctacatataatatgcaatat 40363114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 29449568 - 29449503
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaac 220  Q
    ||||||||||||| || |||||| |||||||  || |||||||||||| |||||||||||||||||    
T  29449568 aagtagtctaatggctagagctcacacaatttaattgtggagaagtagagtgtctggggttcgaac 29449503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 3596352 - 3596300
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccga 225  Q
    |||||| |||||||| |||||||||||| ||||||| ||||||||||| ||||    
T  3596352 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccga 3596300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 4659527 - 4659435
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaatat 247  Q
    ||||||||||||| || |||||| ||||  || |||||||||||| ||||||| || |||||||| || |  |||| ||||||||||||||||    
T  4659527 aagtagtctaatggctagagctcacacatataaatgtggagaagtggggtgtccggagttcgaaccccagcccctatatataatatacaatat 4659435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 30390336 - 30390412
Alignment:
Q  173 gagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaatat 247  Q
    |||||| |||||||| || |||||||||||||||||| ||||||||||| || | |||| |||||||||| ||||||    
T  30390336 gagctcacacaattaaattgtggagaagtagggtgtccggggttcgaaccccggctcctgcatataatatgcaatat 30390412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 13773485 - 13773430
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaa 244  Q
    ||||||||||| | ||||| ||||||||||| |||| |||||||||||||||||||    
T  13773485 tgtggagaagtggagtgtccggggttcgaaccccgactcctacatataatatacaa 13773430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 17777147 - 17777206
Alignment:
Q  189 atgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||||||||| ||||||| ||||||||||| ||||  ||| |||||||||||||||||    
T  17777147 atgtggagaagtggggtgtccggggttcgaaccccgacccctgcatataatatacaatat 17777206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 34149665 - 34149716
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactccgatc-ctacatataatat 240  Q
    ||||||||||||||||||| ||||||||||| |||||| || ||||||||||    
T  34149665 tgtggagaagtagggtgtccggggttcgaaccccgatcactgcatataatat 34149716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 28153092 - 28153185
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccg-atcctacatataatatacaatat 247  Q
    |||||||||| || || |||||| |||||||  || |||||||||| ||||||| ||||||||||| ||| ||||| ||||||| || ||||||    
T  28153092 aagtagtctagtggctagagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccgaatcctgcatataacatgcaatat 28153185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 44021158 - 44021101
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactccgatcctacatataatatacaatat 247  Q
    ||||||||||| ||||||| ||||||||||| ||||||||  |||||| || ||||||    
T  44021158 tgtggagaagtggggtgtccggggttcgaaccccgatcctgtatataacatgcaatat 44021101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 3287007 - 3287071
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||||||| || || |||||| |||||||| |||||||||||| | || || |||||||||||    
T  3287007 aagtagtctagtggctagagctcacacaattaaatgtggagaagtggagtatccggggttcgaac 3287071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 4878328 - 4878236
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaactc-cgatcctacatataatatacaatat 247  Q
    |||||| ||| || || |||||| ||||  || |||||||||||| ||||||| ||||||||||| |  |  |||||||||||||||||||||    
T  4878328 aagtagcctagtggctagagctcacacatataaatgtggagaagtggggtgtccggggttcgaaccctggcccctacatataatatacaatat 4878236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 30392831 - 30392875
Alignment:
Q  204 gtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||||    
T  30392831 gtgtctggggttcgaaccccgactcctacatataatatgcaatat 30392875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 44558097 - 44558057
Alignment:
Q  180 cacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||||| |||||||||||| ||||||| |||||||||||    
T  44558097 cacaattaaatgtggagaagtggggtgtccggggttcgaac 44558057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 45523401 - 45523469
Alignment:
Q  180 cacaattacatgtggagaagtagggtgtctggggttcgaactccgat-cctacatataatatacaatat 247  Q
    ||||||||  |||| |||||| | ||||||||||||||||| ||||| |||||||| | ||||||||||    
T  45523401 cacaattaattgtgcagaagtggtgtgtctggggttcgaaccccgatccctacataaattatacaatat 45523469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 18223702 - 18223760
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaatat 247  Q
    ||||||||||| ||||||| |||||||||||||| |||| |||||||||||| ||||||    
T  18223702 tgtggagaagtggggtgtccggggttcgaactccggatcttacatataatatgcaatat 18223760  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 31769497 - 31769555
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    ||||||||||||| ||||||||||||||||| |||| |||| |||||||||| ||||||    
T  31769497 tgtggagaagtagagtgtctggggttcgaaccccgactcctgcatataatatgcaatat 31769555  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 49089619 - 49089559
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttc 216  Q
    |||||||||| || || |||||| |||||||| |||||||||||| ||||||| |||||||    
T  49089619 aagtagtctagtggctagagctcacacaattatatgtggagaagtggggtgtccggggttc 49089559  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 12935842 - 12935795
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||| |||||||| |||||||||||| ||| |||||||||||||||    
T  12935842 gagctcacacaattaaatgtggagaagtggggcgtctggggttcgaac 12935795  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 9498051 - 9497993
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    ||||||||||| ||||||| ||||||||||| ||||  |||||||||||||| ||||||    
T  9498051 tgtggagaagtggggtgtccggggttcgaaccccgacccctacatataatatgcaatat 9497993  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 10244874 - 10244932
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaatat 247  Q
    ||||||||||| ||||||| ||||||||||| || | ||||||||||||||| ||||||    
T  10244874 tgtggagaagtggggtgtccggggttcgaaccccggctcctacatataatatgcaatat 10244932  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 10690932 - 10690874
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    ||||||||||| |||||| |||||||||||||||||  ||| |||||||||| ||||||    
T  10690932 tgtggagaagtggggtgtttggggttcgaactccgacccctgcatataatatgcaatat 10690874  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 15106676 - 15106734
Alignment:
Q  190 tgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    ||||||||||| | ||||||||||||||||| |||| |||| |||||||||| ||||||    
T  15106676 tgtggagaagtggagtgtctggggttcgaaccccgactcctgcatataatatgcaatat 15106734  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 40518841 - 40518903
Alignment:
Q  157 agtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaa 219  Q
    ||||||||||||  | |||||| |||||||| |||||||||||| ||||||| || |||||||    
T  40518841 agtagtctaatggttggagctcacacaattaaatgtggagaagtggggtgtccggagttcgaa 40518903  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 3392547 - 3392494
Alignment:
Q  195 agaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||| ||||||||||||||||||| ||||  |||||||||||||| ||||||    
T  3392547 agaagtggggtgtctggggttcgaaccccgacccctacatataatatgcaatat 3392494  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 48719919 - 48719826
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaatat 247  Q
    |||||| ||| || || |||||| |||||||| || |||||||||| | ||||||||||||||||| || | |||| |||||||||| ||||||    
T  48719919 aagtagcctagtggctagagctcacacaattaaattgtggagaagtggagtgtctggggttcgaaccccggctcctgcatataatatgcaatat 48719826  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 7778971 - 7779015
Alignment:
Q  180 cacaattacatgtggagaagtagggtgtctggggttcgaactccg 224  Q
    |||||||| |||||||||||| | ||||| |||||||||||||||    
T  7778971 cacaattaaatgtggagaagtggagtgtccggggttcgaactccg 7779015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 21067005 - 21066913
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaatat 247  Q
    |||||| ||| || || |||||| |||||||| ||||||||||||  | |||| ||||||||||| || |  |||||||||||||| ||||||    
T  21067005 aagtagcctagtggctagagctcgcacaattaaatgtggagaagtgagatgtccggggttcgaaccccggcccctacatataatatgcaatat 21066913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 45284787 - 45284839
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccga 225  Q
    |||||| |||||||| |||| ||||||| ||||||| ||||||||||| ||||    
T  45284787 gagctcacacaattaaatgttgagaagtggggtgtccggggttcgaaccccga 45284839  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 47194399 - 47194467
Alignment:
Q  180 cacaattacatgtggagaagtagggtgtctggggttcgaactccgat-cctacatataatatacaatat 247  Q
    ||||||||  ||||||||||| |||||| |||| || |||| ||||| |||||||||| ||||||||||    
T  47194399 cacaattaattgtggagaagtggggtgtttgggatttgaaccccgatccctacatatattatacaatat 47194467  T

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Target: scaffold0445 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 3964 - 4057
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||| ||| || || |||||| |||||||| || |||||||||| | ||||||||||||||||| |||| |||| |||||||||| ||||||    
T  3964 aagtagcctagtggctagagctcacacaattaaattgtggagaagtggagtgtctggggttcgaaccccgactcctgcatataatatgcaatat 4057  T

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Target: scaffold0154 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 28779 - 28836
Alignment:
Q  163 ctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||| || |||||| |||||||| |||||||||||| ||||||| |||||||||||    
T  28779 ctaatggctggagctcacacaattaaatgtggagaagtggggtgtccggggttcgaac 28836  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 5683862 - 5683809
Alignment:
Q  167 tgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    ||||| |||||| ||||  || ||||||||||||||||||||||||||||||||    
T  5683862 tgactagagctcacacatataaatgtggagaagtagggtgtctggggttcgaac 5683809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 252
Target Start/End: Complemental strand, 5333038 - 5332938
Alignment:
Q  154 ttaagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatatatct 251  Q
    |||||||||||| || || |||||| |||||||  || |||||||||| | ||||| ||||||||||| |||| |||| ||||||||||| ||||| |||    
T  5333038 ttaagtagtctagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatataatatctct 5332939  T
Q  252 a 252  Q
    |    
T  5332938 a 5332938  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 22274562 - 22274654
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaatat 247  Q
    |||||| ||| || || |||||| ||||||||  ||||||||||| ||||||| ||||||||||| || | |||| |||||||||| ||||||    
T  22274562 aagtagcctagtggctagagctcacacaattaattgtggagaagtggggtgtccggggttcgaaccccggctcctgcatataatatgcaatat 22274654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 24458436 - 24458344
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaatat 247  Q
    |||||||||| || || |||||| |||||||| |||||||||||| | || || ||||||||||| || |  ||| |||||||||||||||||    
T  24458436 aagtagtctagtggctagagctcacacaattaaatgtggagaagttgagtatccggggttcgaaccccggcccctgcatataatatacaatat 24458344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 25824870 - 25824922
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaactccga 225  Q
    |||||| |||||||| |||| ||||||| ||||||||||||||||||| ||||    
T  25824870 gagctcacacaattatatgttgagaagtggggtgtctggggttcgaaccccga 25824922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 38283219 - 38283179
Alignment:
Q  180 cacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  38283219 cacaattaaatgtggagaagtggggtgtctggggttcgaac 38283179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 42035439 - 42035363
Alignment:
Q  173 gagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaatat 247  Q
    |||||| |||||||| || |||||||||||| ||||||||||||||||| || |  ||| |||||||||||||||||    
T  42035439 gagctcacacaattaaattgtggagaagtagagtgtctggggttcgaaccccagcccctgcatataatatacaatat 42035363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 12770470 - 12770423
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||| |||||||| |||||||||||| ||||||| |||||||||||    
T  12770470 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaac 12770423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 25812177 - 25812224
Alignment:
Q  173 gagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||| |||||||| |||| ||||||| |||||||||||||||||||    
T  25812177 gagctcacacaattaaatgttgagaagtggggtgtctggggttcgaac 25812224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 39362351 - 39362292
Alignment:
Q  189 atgtggagaagtagggtgtctggggttcgaactccgatc-ctacatataatatacaatat 247  Q
    |||||||||||| |||||||||||||||||||||| | | || |||||||||| ||||||    
T  39362351 atgtggagaagtggggtgtctggggttcgaactccaacctctgcatataatatgcaatat 39362292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 13647407 - 13647505
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatatatcta 252  Q
    |||||||||| || || |||||| |||||||| || |||||||||| | ||||| |||||||||||  ||| |||| |||||||||| |||||| ||||    
T  13647407 aagtagtctagtggctagagctcacacaattaaattgtggagaagtggagtgtccggggttcgaaccacgactcctgcatataatatgcaatatctcta 13647505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 13747832 - 13747930
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatatatcta 252  Q
    |||||||||| || || |||||| |||||||| || |||||||||| | ||||| |||||||||||  ||| |||| |||||||||| |||||| ||||    
T  13747832 aagtagtctagtggctagagctcacacaattaaattgtggagaagtggagtgtccggggttcgaaccacgactcctgcatataatatgcaatatctcta 13747930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 32191860 - 32191894
Alignment:
Q  189 atgtggagaagtagggtgtctggggttcgaactcc 223  Q
    |||||||||||| ||||||||||||||||||||||    
T  32191860 atgtggagaagtggggtgtctggggttcgaactcc 32191894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 37669808 - 37669738
Alignment:
Q  154 ttaagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactcc 223  Q
    |||||||| ||||||||| |||||  |||||||  || |||||||||| | ||||||||||||||||||||    
T  37669808 ttaagtagcctaatgactagagctgacacaatttaattgtggagaagtggagtgtctggggttcgaactcc 37669738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 39712264 - 39712334
Alignment:
Q  178 ctcacaattacatgtggagaagtagggtgtctggggttcgaactccga-tcctacatataatatacaatat 247  Q
    |||||||||| |||||||||||| || | || |||||||||| |||||  |||||||||||||| ||||||    
T  39712264 ctcacaattaaatgtggagaagtgggatatccggggttcgaattccgacccctacatataatatgcaatat 39712334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 38344169 - 38344076
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacat-gtggagaagtagggtgtctggggttcgaactcc-gatcctacatataatatacaatat 247  Q
    |||||||||| || || |||||| |||||||  || |||||||||| | ||||||||||||||||| || | |||| |||||||||| ||||||    
T  38344169 aagtagtctagtggctagagctcacacaatttaattgtggagaagtggagtgtctggggttcgaaccccagctcctgcatataatatgcaatat 38344076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 481106 - 481066
Alignment:
Q  180 cacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||||| |||||||||||| ||||||| |||||||||||    
T  481106 cacaattaaatgtggagaagtggggtgtccggggttcgaac 481066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 2115002 - 2114938
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaac 220  Q
    |||||||||| || || |||| | |||||||| |||||||||||| ||||||| || ||||||||    
T  2115002 aagtagtctagtggctggagcccacacaattaaatgtggagaagtggggtgtccggagttcgaac 2114938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 31712668 - 31712576
Alignment:
Q  156 aagtagtctaatgacttgagctctcacaattacatgtggagaagtagggtgtctggggttcgaactc-cgatcctacatataatatacaatat 247  Q
    |||||| ||| || || |||||| ||||  || |||||||||||| ||||||| ||||||||||| |  |  |||||||||||||||||||||    
T  31712668 aagtagcctagtggctagagctcacacatataaatgtggagaagtggggtgtccggggttcgaaccctggcccctacatataatatacaatat 31712576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 60336 - 60304
Alignment:
Q  189 atgtggagaagtagggtgtctggggttcgaact 221  Q
    |||||||||||||||||||||| ||||||||||    
T  60336 atgtggagaagtagggtgtctgaggttcgaact 60304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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