View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16635_low_11 (Length: 334)
Name: NF16635_low_11
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16635_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 32881790 - 32882090
Alignment:
| Q |
14 |
cacagacaatcataaccccatatccccctcaatccaaaaaa---gtaagaccagtcaatcaatcatcataatcataatagttattatattctctcaacca |
110 |
Q |
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| T |
32881790 |
cacagacaatcataaccccatatccccctcaatccaaaaaaaaagtaagaccagtcaatcaatcatcataatcataatagttattat--tctctcaacca |
32881887 |
T |
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| Q |
111 |
acttcatcttatttaaaatcgcatctcatttcattgaaccttcttccttcgagttcgtctcaccacaataactaactacttccgttaccttttcttttct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32881888 |
acttcatcttatttaaaatcgcatctcatttcattgaaccttcttccttcgagttcgtctcaccacaataactgactacttccgttaccttttcttttct |
32881987 |
T |
|
| Q |
211 |
ctcccaacactccatctcaaaattaatccatatacttcatgtaatgtaattaaaattcatatagtatagtatgtgttttgaccaagactttgtctttgtc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32881988 |
ctcccaacactccatctcaaaattaatccatatacttcatgtaatgtaattaaaattcatatagtata-----tgttttgaccaagactttgtctttgtc |
32882082 |
T |
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| Q |
311 |
cttccatt |
318 |
Q |
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|||||||| |
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| T |
32882083 |
cttccatt |
32882090 |
T |
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