View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16635_low_14 (Length: 315)

Name: NF16635_low_14
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16635_low_14
NF16635_low_14
[»] chr8 (11 HSPs)
chr8 (31-251)||(264137-264362)
chr8 (31-251)||(651559-651784)
chr8 (31-251)||(837294-837519)
chr8 (257-302)||(263850-263895)
chr8 (257-302)||(652026-652071)
chr8 (257-302)||(837761-837806)
chr8 (118-169)||(32292307-32292358)
chr8 (118-171)||(22549180-22549233)
chr8 (118-169)||(10844793-10844844)
chr8 (118-169)||(12827439-12827490)
chr8 (117-169)||(22026289-22026341)
[»] chr2 (3 HSPs)
chr2 (118-171)||(33770918-33770971)
chr2 (117-169)||(33174868-33174920)
chr2 (118-170)||(41754198-41754250)
[»] chr6 (4 HSPs)
chr6 (117-169)||(20896872-20896924)
chr6 (117-170)||(20126366-20126419)
chr6 (117-169)||(6331096-6331148)
chr6 (118-170)||(20850230-20850282)
[»] chr5 (6 HSPs)
chr5 (118-170)||(2193725-2193777)
chr5 (118-169)||(34371522-34371573)
chr5 (118-169)||(34371978-34372029)
chr5 (118-169)||(39146849-39146900)
chr5 (118-169)||(42788830-42788881)
chr5 (117-169)||(20039658-20039710)
[»] chr4 (4 HSPs)
chr4 (118-170)||(1645928-1645980)
chr4 (118-170)||(12692178-12692230)
chr4 (117-169)||(50398716-50398768)
chr4 (117-169)||(8467977-8468029)
[»] scaffold0243 (1 HSPs)
scaffold0243 (118-169)||(1130-1181)
[»] chr7 (4 HSPs)
chr7 (118-169)||(2463552-2463603)
chr7 (118-169)||(34405776-34405827)
chr7 (117-169)||(6747782-6747834)
chr7 (117-169)||(11372361-11372413)
[»] chr3 (1 HSPs)
chr3 (120-167)||(50347658-50347705)
[»] chr1 (11 HSPs)
chr1 (118-169)||(16452118-16452169)
chr1 (118-169)||(16461271-16461322)
chr1 (118-169)||(20054265-20054316)
chr1 (118-169)||(20054721-20054772)
chr1 (118-169)||(20055177-20055228)
chr1 (118-169)||(20055633-20055684)
chr1 (118-169)||(20056089-20056140)
chr1 (118-169)||(20056545-20056596)
chr1 (118-169)||(20056992-20057043)
chr1 (118-169)||(20057448-20057499)
chr1 (118-169)||(20057904-20057955)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 264362 - 264137
Alignment:
Q  31 aaactttaaagaaagacgcaatgtaacagtgaaataaagaaaaagagaggggaaagaaatattgactccaaaatccgctcatcaagatgccttgtgca-- 128  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||      
T  264362 aaactttaaagaaagactcaatgtaacattgaaataaagaaaaagagaggggaaagaaatattaactccaagatccgctcatcaagatgccttgtgcatc 264263  T
Q  129 --tcggcgatcactctccgccctcgtcacccttgggcgttacagg-actaaaataaaaaattcgctatattgccagagacttaaaaactcatttaaccct 225  Q
      |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  264262 ggtcggcgatcattctccaccctcgtcacccttgggcgttacaggaactaaaataaaaaattcactatatttccagagacttaaaaactcatttaaccct 264163  T
Q  226 atgttataatatactctaaatatgaa 251  Q
    | ||||||||||||||||||||||||    
T  264162 aagttataatatactctaaatatgaa 264137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 31 - 251
Target Start/End: Original strand, 651559 - 651784
Alignment:
Q  31 aaactttaaagaaagacgcaatgtaacagtgaaataaagaaaaagagaggggaaagaaatattgactccaaaatccgctcatcaagatgccttgtgca-- 128  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||      
T  651559 aaactttaaagaaagactcaatgtaacattgaaataaagaaaaagagaggggaaagaaatattaactccaagatccgctcatcaagatgccttgtgcatc 651658  T
Q  129 --tcggcgatcactctccgccctcgtcacccttgggcgttacagg-actaaaataaaaaattcgctatattgccagagacttaaaaactcatttaaccct 225  Q
      |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  651659 ggtcggcgatcattctccaccctcgtcacccttgggcgttacaggaactaaaataaaaaattcactatatttccagagacttaaaaactcatttaaccct 651758  T
Q  226 atgttataatatactctaaatatgaa 251  Q
    | ||||||||||||||||||||||||    
T  651759 aagttataatatactctaaatatgaa 651784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 31 - 251
Target Start/End: Original strand, 837294 - 837519
Alignment:
Q  31 aaactttaaagaaagacgcaatgtaacagtgaaataaagaaaaagagaggggaaagaaatattgactccaaaatccgctcatcaagatgccttgtgca-- 128  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||      
T  837294 aaactttaaagaaagactcaatgtaacattgaaataaagaaaaagagaggggaaagaaatattaactccaagatccgctcatcaagatgccttgtgcatc 837393  T
Q  129 --tcggcgatcactctccgccctcgtcacccttgggcgttacagg-actaaaataaaaaattcgctatattgccagagacttaaaaactcatttaaccct 225  Q
      |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  837394 ggtcggcgatcattctccaccctcgtcacccttgggcgttacaggaactaaaataaaaaattcactatatttccagagacttaaaaactcatttaaccct 837493  T
Q  226 atgttataatatactctaaatatgaa 251  Q
    | ||||||||||||||||||||||||    
T  837494 aagttataatatactctaaatatgaa 837519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 263895 - 263850
Alignment:
Q  257 cattgtaattgcattggtcatcatgtgagctctatcaaagagagta 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  263895 cattgtaattgcattggtcatcatgtgagctctatcaaagagagta 263850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 652026 - 652071
Alignment:
Q  257 cattgtaattgcattggtcatcatgtgagctctatcaaagagagta 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  652026 cattgtaattgcattggtcatcatgtgagctctatcaaagagagta 652071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 837761 - 837806
Alignment:
Q  257 cattgtaattgcattggtcatcatgtgagctctatcaaagagagta 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  837761 cattgtaattgcattggtcatcatgtgagctctatcaaagagagta 837806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 32292358 - 32292307
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||||||||| |||||||||||| ||||||| ||||||    
T  32292358 tgccttgtgcaccggcgatcactccccgccctcgtcagccttgggtgttaca 32292307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 22549180 - 22549233
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacagg 171  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||    
T  22549180 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacagg 22549233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 10844844 - 10844793
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  10844844 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 10844793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 12827439 - 12827490
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||||||||| || ||||||||| ||||||| ||||||    
T  12827439 tgccttgtgcaccggcgatcactccccaccctcgtcagccttgggtgttaca 12827490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 22026341 - 22026289
Alignment:
Q  117 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    |||||||||||| |||||| |||||  ||||||||||| ||||||| ||||||    
T  22026341 atgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgttaca 22026289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 33770971 - 33770918
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacagg 171  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||||    
T  33770971 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacagg 33770918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 33174920 - 33174868
Alignment:
Q  117 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    |||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  33174920 atgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 33174868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 41754250 - 41754198
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacag 170  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| |||||||    
T  41754250 tgccttgtgcaccggcgaccactccccgccctcgtcatccttgggtgttacag 41754198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 20896872 - 20896924
Alignment:
Q  117 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    |||||||||||| |||||| ||||||||| |||||||| ||||||| ||||||    
T  20896872 atgccttgtgcaacggcgaccactctccgtcctcgtcagccttgggtgttaca 20896924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 20126366 - 20126419
Alignment:
Q  117 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacag 170  Q
    |||||||||||| |||||| ||||| |||||||||||  ||||||| |||||||    
T  20126366 atgccttgtgcaccggcgaccactccccgccctcgtcggccttgggtgttacag 20126419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 6331096 - 6331148
Alignment:
Q  117 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    |||||||||||| |||||| ||||| || ||||||||| ||||||| ||||||    
T  6331096 atgccttgtgcaccggcgaccactccccaccctcgtcagccttgggtgttaca 6331148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 20850282 - 20850230
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacag 170  Q
    ||||||||||| |||||| |||||  ||||||||||| ||||||| |||||||    
T  20850282 tgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgttacag 20850230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 2193777 - 2193725
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacag 170  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| |||||||    
T  2193777 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacag 2193725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 34371573 - 34371522
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  34371573 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 34371522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 34372029 - 34371978
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  34372029 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 34371978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 39146900 - 39146849
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||||||||| || ||||||||| ||||||| ||||||    
T  39146900 tgccttgtgcaccggcgatcactccccaccctcgtcagccttgggtgttaca 39146849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 42788830 - 42788881
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  42788830 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 42788881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 20039658 - 20039710
Alignment:
Q  117 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    |||||||||||| |||||| || || |||||||||||| ||||||| ||||||    
T  20039658 atgccttgtgcaccggcgaccattccccgccctcgtcagccttgggtgttaca 20039710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 1645928 - 1645980
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacag 170  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| |||||||    
T  1645928 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacag 1645980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 12692178 - 12692230
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttacag 170  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| |||||||    
T  12692178 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacag 12692230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 50398716 - 50398768
Alignment:
Q  117 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    |||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  50398716 atgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 50398768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 8467977 - 8468029
Alignment:
Q  117 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||||  ||||| ||||| |||||||||||| ||| ||||||||||    
T  8467977 atgccttgtgcactggcgaccactccccgccctcgtcaacctcgggcgttaca 8468029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 1181 - 1130
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  1181 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 1130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 2463603 - 2463552
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  2463603 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 2463552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 34405776 - 34405827
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  34405776 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 34405827  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 6747782 - 6747834
Alignment:
Q  117 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||| ||||||    
T  6747782 atgccttgtgcaccggcgaccactccctgccctcgtcagccttgggtgttaca 6747834  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 11372413 - 11372361
Alignment:
Q  117 atgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    |||||||||||||||| |||||||||||  || ||| | ||||||||||||||    
T  11372413 atgccttgtgcatcggtgatcactctccatccacgtaagccttgggcgttaca 11372361  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 50347705 - 50347658
Alignment:
Q  120 ccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgtta 167  Q
    ||||||||| |||||||||||| |||||||||||| ||||||| ||||    
T  50347705 ccttgtgcaccggcgatcactccccgccctcgtcagccttgggtgtta 50347658  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 16452118 - 16452169
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  16452118 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 16452169  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 16461271 - 16461322
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  16461271 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 16461322  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 20054265 - 20054316
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20054265 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20054316  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 20054721 - 20054772
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20054721 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20054772  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 20055177 - 20055228
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20055177 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20055228  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 20055633 - 20055684
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20055633 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20055684  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 20056089 - 20056140
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20056089 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20056140  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 20056545 - 20056596
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20056545 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20056596  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 20056992 - 20057043
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20056992 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20057043  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 20057448 - 20057499
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20057448 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20057499  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 20057904 - 20057955
Alignment:
Q  118 tgccttgtgcatcggcgatcactctccgccctcgtcacccttgggcgttaca 169  Q
    ||||||||||| |||||| ||||| |||||||||||| ||||||| ||||||    
T  20057904 tgccttgtgcaccggcgaccactccccgccctcgtcaaccttgggtgttaca 20057955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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