View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16635_low_15 (Length: 308)
Name: NF16635_low_15
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16635_low_15 |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0685 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 109429 - 109131
Alignment:
| Q |
9 |
aagcaaaggcatcaaaaacctaaacaaggagatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcactt |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109429 |
aagcataggcatcaaaaacctaaacaaggagatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcactt |
109330 |
T |
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| Q |
109 |
ccaaaggagtatattcaattcccaaactctttgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagtt |
208 |
Q |
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| T |
109329 |
ccaaaggagtatattcaattcccaaactcgttgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagtt |
109230 |
T |
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| Q |
209 |
aacaaagtgaagacgatattagaaaaatgtaaatacagaaatggacagaatgatgaatcatttttatagtaaccattaacctatgatttcggatattaaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
109229 |
aacaaagtgaagacgatattagaaaaatgtaaatacagaaatggacagaatgatgaatca-ttttatagtaaccattaacctatgatttcggatattaaa |
109131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 28 - 241
Target Start/End: Complemental strand, 90613 - 90400
Alignment:
| Q |
28 |
ctaaacaaggagatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaat |
127 |
Q |
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| T |
90613 |
ctaaacaaggagataccacaaattaaaggttggcgaacttcttttctttcaaactttcaacagtctccttgatgctcacttccaaaggagtatattcaag |
90514 |
T |
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| Q |
128 |
tcccaaactctttgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagttaacaaagtgaagacgatat |
227 |
Q |
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| T |
90513 |
tcccaagcttttcgccttttctttggaaacctgatatataggcacatatggcttatcgtccgcacacctggtaacatagttgacaaagtgaaaacgatat |
90414 |
T |
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| Q |
228 |
tagaaaaatgtaaa |
241 |
Q |
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||||||||| |||| |
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| T |
90413 |
tagaaaaatctaaa |
90400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 184
Target Start/End: Complemental strand, 2709120 - 2708966
Alignment:
| Q |
38 |
agatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttcct--------tgatgctcacttccaaaggagtatattcaattc |
129 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |||| ||||||| ||||||||| |||| ||||||||| |
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| T |
2709120 |
agatatcacaaattaaaagttggcgaacttcttttctttcaaattttccacagtctcctactctccttgatgctgacttccaaaagagttaattcaattc |
2709021 |
T |
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| Q |
130 |
ccaaactctttgccttttctttggaaaactgatatgtaggcacatatggcttatc |
184 |
Q |
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|||| ||||| ||||||||||||||| |||||||||||||| || |||||||| |
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| T |
2709020 |
ccaagctcttgaccttttctttggaaacctgatatgtaggcatgtacggcttatc |
2708966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 90366 - 90330
Alignment:
| Q |
233 |
aaatgtaaatacagaaatggacagaatgatgaatcat |
269 |
Q |
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| T |
90366 |
aaatgtaaatacagaaacggacagaatgatgaatcat |
90330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 25936549 - 25936423
Alignment:
| Q |
45 |
acaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctttgcct |
144 |
Q |
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||||||||||||||||||| ||| || ||| | || ||||| ||||| ||||||| | | |||||||||| |||| | || |||||||||||||| |||| |
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| T |
25936549 |
acaaattaaaagttgacgatctttttctctctgaagctttccacagtctccttgagggtgacttccaaagaagtaaactcgattcccaaactcttagcct |
25936450 |
T |
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| Q |
145 |
tttctttggaaaactgatatgtaggca |
171 |
Q |
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|||| || |||| ||||||||| |||| |
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| T |
25936449 |
tttccttagaaatctgatatgttggca |
25936423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 26105151 - 26105073
Alignment:
| Q |
93 |
tccttgatgctcacttccaaaggagtatattcaattcccaaactctttgccttttctttggaaaactgatatgtaggca |
171 |
Q |
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| T |
26105151 |
tccttgaggctgatttccaaaggagtaaactcgattccaaagctcttggccttttccttggaaatctgatatgttggca |
26105073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 207
Target Start/End: Complemental strand, 6089 - 5922
Alignment:
| Q |
40 |
atatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctt |
139 |
Q |
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||||||||||||| ||||| | ||||| || ||||| |||||||| || | || | | ||||||||||| ||| || |||||| ||| || |||| |
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| T |
6089 |
atatcacaaattagaagttagcaaactttttatctttgaaactttctacgatctctctaaggctcacttccaggggaataaattcaactcctaaggtctt |
5990 |
T |
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| Q |
140 |
tgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagt |
207 |
Q |
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||||||||||||||||| |||| |||| ||| | ||||||||||| || |||||| ||||||||| |
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| T |
5989 |
tgccttttctttggaaacctgaaatgtttgcatcaaaggcttatcgtctgcgcacctgataacatagt |
5922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 207
Target Start/End: Complemental strand, 29550416 - 29550249
Alignment:
| Q |
40 |
atatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctt |
139 |
Q |
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||||||||||||| ||||| | ||||| || ||||| |||||||| || | || | | ||||||||||| ||| || |||||| ||| || |||| |
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| T |
29550416 |
atatcacaaattagaagttagcaaactttttatctttgaaactttctacgatctctctaaggctcacttccaggggaataaattcaactcctaaggtctt |
29550317 |
T |
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| Q |
140 |
tgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagt |
207 |
Q |
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||||||||||||||||| |||| |||| ||| | ||||||||||| || |||||| ||||||||| |
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| T |
29550316 |
tgccttttctttggaaacctgaaatgtttgcatcaaaggcttatcgtctgcgcacctgataacatagt |
29550249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 29556792 - 29556747
Alignment:
| Q |
121 |
attcaattcccaaactctttgccttttctttggaaaactgatatgt |
166 |
Q |
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| T |
29556792 |
attcaattcccaacgtctttgccttttctttggaaatctgaaatgt |
29556747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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