View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16635_low_16 (Length: 307)
Name: NF16635_low_16
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16635_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 4 - 289
Target Start/End: Complemental strand, 39544101 - 39543817
Alignment:
| Q |
4 |
ctttgtatatagtatagattataaagtgttttaatcgtcattgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttg |
103 |
Q |
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| T |
39544101 |
ctttgtatatagtatagattataa-gtgttttaatcgtcattgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttg |
39544003 |
T |
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| Q |
104 |
accatcgtatagcggacgcatattcagcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaataacgca |
203 |
Q |
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| T |
39544002 |
accatcgtatagcggacgcatattctgcaaacatgttccttgtatcatgggccgagatagctcgacccaacaataacaagtctttgatcccaacaatgca |
39543903 |
T |
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| Q |
204 |
accttgttttagacggtcacttatgaccccacgacgcccaccttccatacatccttcactttatgacatgtatgtccccatctctg |
289 |
Q |
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| T |
39543902 |
accttgttttagacggtcacttatgaccccacgacgcccaccttccatacatccttcactttatgacatgtatgtccccatctctg |
39543817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 28 - 289
Target Start/End: Complemental strand, 39554097 - 39553836
Alignment:
| Q |
28 |
agtgttttaatcgtcattgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatatt |
127 |
Q |
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| T |
39554097 |
agtgttttaattatcattgttactatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctatt |
39553998 |
T |
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| Q |
128 |
cagcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaataacgcaaccttgttttagacggtcacttat |
227 |
Q |
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| T |
39553997 |
ctgcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttct |
39553898 |
T |
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| Q |
228 |
gaccccacgacgcccaccttccatacatccttcactttatgacatgtatgtccccatctctg |
289 |
Q |
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| T |
39553897 |
gaccccacgacgcccaccttccatccatccttcaatttatgacatgtatgtccccatctctg |
39553836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 44 - 287
Target Start/End: Complemental strand, 39587191 - 39586948
Alignment:
| Q |
44 |
ttgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatattcagcaaacatgttcct |
143 |
Q |
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| T |
39587191 |
ttgtaactgtgcaggcaacttggatgaaatgtggtgggttagtagtggcgtgcaattttgaccatcgaatagccgacgcctattctgcaaacatgtttct |
39587092 |
T |
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| Q |
144 |
tgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaataacgcaaccttgttttagacggtcacttatgaccccacgacgccca |
243 |
Q |
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| T |
39587091 |
tgtatcatgggccgagatagcccgatcgagcaataacaagtctttgatcccaacaacacaaccttgttttcaaaggtcccttctgaccccaagacaccca |
39586992 |
T |
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| Q |
244 |
ccttccatacatccttcactttatgacatgtatgtccccatctc |
287 |
Q |
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| T |
39586991 |
ccttccatccatccttcactctatgacatgtacatccccatctc |
39586948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 17503870 - 17503782
Alignment:
| Q |
73 |
tgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatattcagcaaacatgttccttgtatcatgggccgagat |
161 |
Q |
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| T |
17503870 |
tgtggtgggatagtagtggcatgcacatttgatcatcgcatagcagatgcatattcaacaaacatgttcctagtatcatgggccgagat |
17503782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 17475735 - 17475654
Alignment:
| Q |
85 |
gtagtggcttgcacttttgaccatcgtatagcggacgcatattcagcaaacatgttccttgtatcatgggccgagatagctc |
166 |
Q |
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| T |
17475735 |
gtagtggcatgcacatttgatcatcgcatagcagatgcctactcaacaaacatgttcttagtatcatgggccgagatggctc |
17475654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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