View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16635_low_17 (Length: 287)
Name: NF16635_low_17
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16635_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 108853 - 108667
Alignment:
| Q |
1 |
ttataatgaagttaacctctaaattgttgaaatttttctgcatttttcacttaattacctttttctgtatgtattaaataaacaaccctgaatcaaatat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
108853 |
ttatactgaagttaacctctaaattgttgaaatttttctgcatttttctcttaattacctttttctgtatgtattaaataaacaaccctgaatcaaatat |
108754 |
T |
|
| Q |
101 |
tagtgatgactgaatcctttcatttttagcactgaattgagtttcaaacaggtaaagaaagctttaaagaatgacgcacaccagata |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
108753 |
tagtgatgactgaatcctttcatttttagcactgaattgagtttcaaacaggtaaagaaagctttaaagaatgacgcacaccagata |
108667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 89343 - 89261
Alignment:
| Q |
189 |
attatatgcaatctttcagttatcgaaattattaatcttacttctctgggagttgcaatgaagggtacagttcacgtaaaatc |
271 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
89343 |
attatatgctatcattcagttatcgaaattattaatcttacttctctgggagttgcaacgaagggtacagttcacgtaaaatc |
89261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 108430 - 108366
Alignment:
| Q |
208 |
ttatcgaaattattaatcttacttctctgggagttgcaatgaagggtacagttcacgtaaaatct |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
108430 |
ttatcgaaattattaatcttacttctctgggagttgcaacgaagggtacagttcacgtaaaatct |
108366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 156
Target Start/End: Complemental strand, 2708414 - 2708331
Alignment:
| Q |
73 |
attaaataaacaaccctgaatcaaatattagtgatgactgaatcctttcatttttagcactgaattgagtttcaaacaggtaaa |
156 |
Q |
| |
|
||||||||||||||| |||||| |||| | ||| ||||||||| |||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
2708414 |
attaaataaacaaccttgaatcggatatcaatgaggactgaatcttttcatatgtagcactgaattgagtttcaaacaggtaaa |
2708331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 89457 - 89372
Alignment:
| Q |
100 |
ttagtgatgactgaatcctttcatttttagcactgaattgagtttcaaacaggtaaagaaagctttaaagaatgacgcacaccagat |
186 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||||||| ||||| ||||| ||||| |
|
|
| T |
89457 |
ttagcgatgactgaatcctttcatttt-agcattgaattgagtttcaaacaagtaaataaagctttaatgaatgtggcacatcagat |
89372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 2708287 - 2708204
Alignment:
| Q |
189 |
attatatgcaatctttcagttatcgaaattattaatcttacttctctgggagttgcaatgaagggtacagttcacgtaaaatct |
272 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| ||| |||||||||||||| | |||| || | | ||||||||||| |
|
|
| T |
2708287 |
attatatgcaatctttaagttgctgaaattattaatcttccttttctgggagttgcaacgtagggcactggttacgtaaaatct |
2708204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University