View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16635_low_19 (Length: 286)
Name: NF16635_low_19
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16635_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 26157239 - 26157507
Alignment:
| Q |
1 |
tattcagatcacttcaagcaacaaagtttttccagacgacagaacttgattggtttgaagcaggtcttcaagtctgtcggcaggggtacaatatgttgaa |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26157239 |
tattcagatcacttgaagcaacaaagtttttccagacgacagaactttattgttttgaagcaggtcttcaagtctgtcggcaggggtacaatatgttgaa |
26157338 |
T |
|
| Q |
101 |
tctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaatgcctgtcaaaaccttgactataaaagagcataagaaatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26157339 |
tctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaaagcctgtcaaaaccttgactataaaagagcataagaaatca |
26157438 |
T |
|
| Q |
201 |
cgatttggtaatgcttttcacctttgccgtgagatccttcgtttgacaaaacttgtggtggatgccaat |
269 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26157439 |
cgatttggtaatgcttttcatctttgccgtgagatccttcgtttgacaaaacttgtggtggatgccaat |
26157507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 26170537 - 26170805
Alignment:
| Q |
1 |
tattcagatcacttcaagcaacaaagtttttccagacgacagaacttgattggtttgaagcaggtcttcaagtctgtcggcaggggtacaatatgttgaa |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26170537 |
tattcagatcacttgaagcaacaaagtttttccagacgacagaactttattgttttgaagcaggtcttcaagtctgtcggcaggggtacaatatgttgaa |
26170636 |
T |
|
| Q |
101 |
tctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaatgcctgtcaaaaccttgactataaaagagcataagaaatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26170637 |
tctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaaagcctgtcaaaaccttgactataaaagagcataagaaatca |
26170736 |
T |
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| Q |
201 |
cgatttggtaatgcttttcacctttgccgtgagatccttcgtttgacaaaacttgtggtggatgccaat |
269 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26170737 |
cgatttggtaatgcttttcatctttgccgtgagatccttcgtttgacaaaacttgtggtggatgccaat |
26170805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 44784234 - 44783966
Alignment:
| Q |
1 |
tattcagatcacttcaagcaacaaagtttttccagacgacagaacttgattggtttgaagcaggtcttcaagtctgtcggcaggggtacaatatgttgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44784234 |
tattcagatcacttcaagcaacaaagtttttccagaccacagaacttgattgggttgaagcaggtcttcaagtctgtcgacaggggtacaatatgttgaa |
44784135 |
T |
|
| Q |
101 |
tctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaatgcctgtcaaaaccttgactataaaagagcataagaaatca |
200 |
Q |
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|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |
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| T |
44784134 |
tctgttaattcacaggaaaaatttgaactatcttcaccttgattataatttcaatttaaagcctgtcaaaaccttgactacaaaagagcgtaagaaatca |
44784035 |
T |
|
| Q |
201 |
cgatttggtaatgcttttcacctttgccgtgagatccttcgtttgacaaaacttgtggtggatgccaat |
269 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44784034 |
cgatttggtaatgcttttcatctttgccgtgagatccttcgtttgacaaaacttgtggtggatgccaat |
44783966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 2896368 - 2896636
Alignment:
| Q |
1 |
tattcagatcacttcaagcaacaaagtttttccagacgacagaacttgattggtttgaagcaggtcttcaagtctgtcggcaggggtacaatatgttgaa |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||||| |
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| T |
2896368 |
tattcagatcacttcaagcgacaaagtttttccagaccacagaacttgattgggttgaagcaggtcttcaagtttgtaagcaggggtacaacatgttgaa |
2896467 |
T |
|
| Q |
101 |
tctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaatgcctgtcaaaaccttgactataaaagagcataagaaatca |
200 |
Q |
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|||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||| |||||||||| |
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| T |
2896468 |
tctgttgatacacaggaaaaatttgaactaccttcaccttgattataattttaatttgaagcctgtcaaaaccttgactacaaaagagcgtaagaaatca |
2896567 |
T |
|
| Q |
201 |
cgatttggtaatgcttttcacctttgccgtgagatccttcgtttgacaaaacttgtggtggatgccaat |
269 |
Q |
| |
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|||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2896568 |
cgatttggtaatgcttttcatctctgtcgtgagatccttcgtttgacgaaacttgtggtggatgccaat |
2896636 |
T |
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