View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16635_low_2 (Length: 477)
Name: NF16635_low_2
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16635_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 15 - 463
Target Start/End: Original strand, 33411422 - 33411870
Alignment:
| Q |
15 |
agttcaacactgcaaaaaatgcatagtagtaatcaagatgagaatcattcagattgtttaaaatccaccctttatgaccatgttcctgagttatatgcga |
114 |
Q |
| |
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|||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33411422 |
agttcaacaccgcgaaaaacgcatagtagtaatcaagatgagaatcattcagattgttcaaaatccaccctttatgaccatgttcctgagttatatgcga |
33411521 |
T |
|
| Q |
115 |
tactgtcgacaaaaggaatgaactgatgaaatttccaacgcctaatgtagttgatgaatatgaagttccaatactcttcatgctttctggagcttgatcg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33411522 |
tactgtcgacaaaaggaatgaactgatgaaatttccaacgcctaatgtagttgaagaatacgaagttccaatactcttcatgctttctggagcttgatca |
33411621 |
T |
|
| Q |
215 |
tagaaaaactcgattttcgcaacctctaaaaatgcatcagctgttcccataagtataaactgaggaagcaaaatgaaaatactcaaaggaacttgtcctc |
314 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33411622 |
tagaaaaactcgattttcgcaacctctagaaatgcatcagctgttcccataagtataaactgaggaagcaaaatgaaaatactcaaaggaacttgtcctc |
33411721 |
T |
|
| Q |
315 |
cactttcaactaatccatgttcttttgccactctaagcctataattttctgtcacagaggcaactaccatgataattgtgtgtagaacaagaccaattcc |
414 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33411722 |
cactttcaactaaaccatgttcttttgccactctaagcctataattttctgtcacagaggcaactaccatgataattgtgtgaagaacaagaccaattcc |
33411821 |
T |
|
| Q |
415 |
cattctttgaagaagcgtaattcctcttggattcttggttaatctctgc |
463 |
Q |
| |
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||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
33411822 |
cattctttgaagaagggtaatccctcttggattcttggttaatctctgc |
33411870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 29 - 357
Target Start/End: Complemental strand, 15730299 - 15729971
Alignment:
| Q |
29 |
aaaaatgcatagtagtaatcaagatgagaatcattcagattgtttaaaatccaccctttatgaccatgttcctgagttatatgcgatactgtcgacaaaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||| || |||||||||||||| ||||||||||||| ||| || || || ||||| || | || |
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|
| T |
15730299 |
aaaaatgcatagtagtaatcaagatgagaagcattaagattattcaaaatccaccctttgtgaccatgttcctcagtgatgtgtgaaactgttgatagaa |
15730200 |
T |
|
| Q |
129 |
ggaatgaactgatgaaatttccaacgcctaatgtagttgatgaatatgaagttccaatactcttcatgctttctggagcttgatcgtagaaaaactcgat |
228 |
Q |
| |
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| || | ||| || |||||||||| |||||| |||| |||||| ||||| || | |||||||||||||||||||||||||| ||||| ||||| || |
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|
| T |
15730199 |
gaaaagtactaataaaatttccaatgcctaagctagtcattgaataagaagtgcccaagctcttcatgctttctggagcttgatcatagaagaactcaat |
15730100 |
T |
|
| Q |
229 |
tttcgcaacctctaaaaatgcatcagctgttcccataagtataaactgaggaagcaaaatgaaaatactcaaaggaacttgtcctccactttcaactaat |
328 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||| || ||||| |||||| ||||||| ||||||||| | |
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|
| T |
15730099 |
tttagcaacctctaaaaatgcatcagctgttcccataagtaaaaattgagggagtaaaatgaatatgctcaatggaactaatcctccattttcaactact |
15730000 |
T |
|
| Q |
329 |
ccatgttcttttgccactctaagcctata |
357 |
Q |
| |
|
||||||||||| || || ||||||||||| |
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|
| T |
15729999 |
ccatgttctttggctacactaagcctata |
15729971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 29 - 357
Target Start/End: Complemental strand, 15737902 - 15737574
Alignment:
| Q |
29 |
aaaaatgcatagtagtaatcaagatgagaatcattcagattgtttaaaatccaccctttatgaccatgttcctgagttatatgcgatactgtcgacaaaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||| || |||||||||||||| ||||||||||||| ||| || || || ||||| || | || |
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|
| T |
15737902 |
aaaaatgcatagtagtaatcaagatgagaagcattaagattattcaaaatccaccctttgtgaccatgttcctcagtgatgtgtgaaactgttgatagaa |
15737803 |
T |
|
| Q |
129 |
ggaatgaactgatgaaatttccaacgcctaatgtagttgatgaatatgaagttccaatactcttcatgctttctggagcttgatcgtagaaaaactcgat |
228 |
Q |
| |
|
| || | ||| || ||| |||||| ||||| |||| ||||||| ||||| |||| ||||||||||||||||||||||||||| ||||| ||||| || |
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|
| T |
15737802 |
gaaaagtacttataaaacttccaatacctaagctagtcaatgaataagaagtgccaagactcttcatgctttctggagcttgatcatagaagaactcaat |
15737703 |
T |
|
| Q |
229 |
tttcgcaacctctaaaaatgcatcagctgttcccataagtataaactgaggaagcaaaatgaaaatactcaaaggaacttgtcctccactttcaactaat |
328 |
Q |
| |
|
||| |||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| || ||||| ||||| ||||||| ||||||||| | |
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|
| T |
15737702 |
tttagcaacctctatgaatgcttcagctgttcccataagtataaattgtggaagcaaaatgaatatgctcaatggaaccaatcctccattttcaactact |
15737603 |
T |
|
| Q |
329 |
ccatgttcttttgccactctaagcctata |
357 |
Q |
| |
|
||||||||||| || || ||||||||||| |
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|
| T |
15737602 |
ccatgttctttggctacactaagcctata |
15737574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 29 - 345
Target Start/End: Complemental strand, 15780001 - 15779685
Alignment:
| Q |
29 |
aaaaatgcatagtagtaatcaagatgagaatcattcagattgtttaaaatccaccctttatgaccatgttcctgagttatatgcgatactgtcgacaaaa |
128 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| || ||||| ||||||||||||| |||| ||||| || || ||||| || ||||| || | || |
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|
| T |
15780001 |
aaaaatgcgtagtagtaatcaagatgagaagcatttaggttgttcaaaatccacccttggtgactatgtttctttgtgatatgtgaaactgttgagagaa |
15779902 |
T |
|
| Q |
129 |
ggaatgaactgatgaaatttccaacgcctaatgtagttgatgaatatgaagttccaatactcttcatgctttctggagcttgatcgtagaaaaactcgat |
228 |
Q |
| |
|
| || | || | |||| | |||| ||| |||||| | ||||| ||| | |||| ||||||||||||||||| ||||| || ||||||||||| || |
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|
| T |
15779901 |
gaaaagtgctaaggaaactaccaatgcccgtagtagttaaggaatacgaactcccaaggctcttcatgctttctggggcttggtcatagaaaaactcaat |
15779802 |
T |
|
| Q |
229 |
tttcgcaacctctaaaaatgcatcagctgttcccataagtataaactgaggaagcaaaatgaaaatactcaaaggaacttgtcctccactttcaactaat |
328 |
Q |
| |
|
||| ||| ||||||| | || || ||| |||||||||||| ||| || ||| ||||||||| || ||||| ||||| ||||||||| |||||| || | |
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|
| T |
15779801 |
tttggcaccctctaagagggcttctgctattcccataagtacaaattgtggagccaaaatgaatatgctcaatggaacctgtcctccattttcaattact |
15779702 |
T |
|
| Q |
329 |
ccatgttcttttgccac |
345 |
Q |
| |
|
||||||||||| ||||| |
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|
| T |
15779701 |
ccatgttctttggccac |
15779685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 29 - 308
Target Start/End: Complemental strand, 15755996 - 15755717
Alignment:
| Q |
29 |
aaaaatgcatagtagtaatcaagatgagaatcattcagattgtttaaaatccaccctttatgaccatgttcctgagttatatgcgatactgtcgacaaaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| || || |||||||||||| | |||||||| || ||| | ||| || ||||| || | || |
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|
| T |
15755996 |
aaaaatgcatagtagtaatcaagatgagaagcattcaagttattcaaaatccaccctcgaccaccatgtttctcagtgacatgtgaaactgttgagagaa |
15755897 |
T |
|
| Q |
129 |
ggaatgaactgatgaaatttccaacgcctaatgtagttgatgaatatgaagttccaatactcttcatgctttctggagcttgatcgtagaaaaactcgat |
228 |
Q |
| |
|
| || | |||| ||| | |||| || |||||| | |||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||| || |
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|
| T |
15755896 |
gaaaagtgctgagaaaactaccaattccagtagtagttaaggaatatgatgttccaagactcttcatgctttctggtgcttgatcatagaaaaactccat |
15755797 |
T |
|
| Q |
229 |
tttcgcaacctctaaaaatgcatcagctgttcccataagtataaactgaggaagcaaaatgaaaatactcaaaggaactt |
308 |
Q |
| |
|
||| ||| ||||||||| ||| ||||| ||||||||||||||| || || ||||||||||| || || || ||||||| |
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|
| T |
15755796 |
ttttgcaccctctaaaagtgcttcagccactcccataagtataaattgtggtagcaaaatgaatatgcttaatggaactt |
15755717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 161 - 308
Target Start/End: Complemental strand, 15766733 - 15766586
Alignment:
| Q |
161 |
gtagttgatgaatatgaagttccaatactcttcatgctttctggagcttgatcgtagaaaaactcgattttcgcaacctctaaaaatgcatcagctgttc |
260 |
Q |
| |
|
|||||| |||| ||||| ||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||| ||||||||| ||| ||||| || |
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|
| T |
15766733 |
gtagttaatgagtatgatgttccaaggctcttcatgctttctggtgcttgatcatagaaaaactccatttttgcaccctctaaaagtgcttcagccactc |
15766634 |
T |
|
| Q |
261 |
ccataagtataaactgaggaagcaaaatgaaaatactcaaaggaactt |
308 |
Q |
| |
|
||||||||||||| || |||||||||||||| || || || ||||||| |
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|
| T |
15766633 |
ccataagtataaattgtggaagcaaaatgaatatgcttaatggaactt |
15766586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 15766865 - 15766809
Alignment:
| Q |
29 |
aaaaatgcatagtagtaatcaagatgagaatcattcagattgtttaaaatccaccct |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| || || |||||||||||| |
|
|
| T |
15766865 |
aaaaatgcatagtagtaatcaagatgagaagcattcaagttattcaaaatccaccct |
15766809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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