View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16635_low_20 (Length: 264)
Name: NF16635_low_20
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16635_low_20 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 16955651 - 16955885
Alignment:
| Q |
22 |
tgatcatcgaaatagtgcaccacatgtgaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaag |
121 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16955651 |
tgatcatagaaatagtgcgccacatgagaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaag |
16955750 |
T |
|
| Q |
122 |
cctctggagaatgtttattgccaaatcttttggtagttcaagccaatttggctctgctgctgtggtttccctttccactcccgttgatggaattgaagaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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|
| T |
16955751 |
cctctggagaatgtttattgccaaatcttttggtagttcaagccaatttggctctgctgctgtgctttccctttctactcccgttgatggaattgaagaa |
16955850 |
T |
|
| Q |
222 |
gatgccatcatgcaagtggaacgaaatagtattat |
256 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||| |
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|
| T |
16955851 |
gatgccgtcatgcaagtggaacgagatggtattat |
16955885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 16966170 - 16966382
Alignment:
| Q |
23 |
gatcatcgaaatagtgcaccacatgtgaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagc |
122 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
16966170 |
gatcatagaaatagtgtgccacatgtgaggatccttgcaaatattccaccataaaggacacacttgacatacacttgtgactatttcaatagtatcaagc |
16966269 |
T |
|
| Q |
123 |
ctctggagaatgtttattgccaaatcttttggtagttcaagccaatttggctctgctgctgtggtttccctttccactcccgttgatggaattgaagaag |
222 |
Q |
| |
|
||||||||||| ||||||| ||||||| | ||||||||||||||||||||||| | ||||||| |||||||||| ||| || || ||| |||||||||| |
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|
| T |
16966270 |
ctctggagaatatttattgtcaaatctctgggtagttcaagccaatttggctcagttgctgtgctttccctttctacttccaatggtggtattgaagaag |
16966369 |
T |
|
| Q |
223 |
atgccatcatgca |
235 |
Q |
| |
|
||||||||||||| |
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|
| T |
16966370 |
atgccatcatgca |
16966382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 173
Target Start/End: Complemental strand, 30201248 - 30201116
Alignment:
| Q |
41 |
ccacatgtgaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggagaatgtttatt |
140 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||| ||| |||||||||||| ||||||| ||||||||||| ||| |||||| || ||||||||| | |
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|
| T |
30201248 |
ccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatttcaatggtactaagcctttgaagaatgttttct |
30201149 |
T |
|
| Q |
141 |
gccaaatcttttggtagttcaagccaatttggc |
173 |
Q |
| |
|
| | ||||| || |||||||||||||||||| |
|
|
| T |
30201148 |
gtaatgtctttaggaagttcaagccaatttggc |
30201116 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 173
Target Start/End: Complemental strand, 30227433 - 30227291
Alignment:
| Q |
31 |
aaatagtgcaccacatgtgaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggag |
130 |
Q |
| |
|
|||| |||| ||||||| |||||||||||||||| |||||| ||| ||| |||||||||||| ||||||| ||||| || || ||| ||||||| || || |
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|
| T |
30227433 |
aaatggtgcgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtcacaatctcgatggtaccaagcctttgaag |
30227334 |
T |
|
| Q |
131 |
aatgtttattgccaaatcttttggtagttcaagccaatttggc |
173 |
Q |
| |
|
||||||| ||| | ||| | || |||||||||||||||||| |
|
|
| T |
30227333 |
aatgtttgttgtgatgtctctaggaagttcaagccaatttggc |
30227291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 30214786 - 30214714
Alignment:
| Q |
49 |
gaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaag |
121 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||||||||| ||||||| ||||| ||||| ||| |||| |
|
|
| T |
30214786 |
gaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatctcaatggtaccaag |
30214714 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 172
Target Start/End: Original strand, 36313861 - 36313998
Alignment:
| Q |
32 |
aatagtgcaccacatgtgaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggaga |
131 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| ||| ||||| || ||| || |||| |||| || |||||||||| || |||||||||| ||| |
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|
| T |
36313861 |
aatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacaacatgcactcgtcacaatttcaa---taccaagcctctgaaga |
36313957 |
T |
|
| Q |
132 |
atgtttattgccaaatcttttggtagttcaagccaatttgg |
172 |
Q |
| |
|
|||||| || |||||| |||| || |||||||||||||| |
|
|
| T |
36313958 |
atgttttctgtcaaatcacttggaagatcaagccaatttgg |
36313998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 29713047 - 29712922
Alignment:
| Q |
49 |
gaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggagaatgtttattgccaaatc |
148 |
Q |
| |
|
||||||||||||||||||||| ||| |||| || || | || | ||||||| |||||||||| ||||||||| || ||||| ||||| | || || |
|
|
| T |
29713047 |
gaggatccttgcaaatattccgccacaaagaacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagtatgttcttcatcaggtc |
29712948 |
T |
|
| Q |
149 |
ttttggtagttcaagccaatttggct |
174 |
Q |
| |
|
| |||| ||||||||||||||||||| |
|
|
| T |
29712947 |
tattggaagttcaagccaatttggct |
29712922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 172
Target Start/End: Original strand, 36321267 - 36321407
Alignment:
| Q |
32 |
aatagtgcaccacatgtgaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggaga |
131 |
Q |
| |
|
|||| ||||||||||| | |||||||||||||| ||| ||||| ||||| ||| | || |||| || |||||||||| ||| |||||||||| || |
|
|
| T |
36321267 |
aataatgcaccacatgagtggatccttgcaaatgttcaaccattgtgggcatactcggcaagcactcgtcacaatttcaaacgtaccaagcctctgaagg |
36321366 |
T |
|
| Q |
132 |
atgtttattgccaaatcttttggtagttcaagccaatttgg |
172 |
Q |
| |
|
|||||| || |||||| |||| || |||||||||||||| |
|
|
| T |
36321367 |
atgttttctgtcaaatcacttggaagatcaagccaatttgg |
36321407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 36333938 - 36333980
Alignment:
| Q |
32 |
aatagtgcaccacatgtgaggatccttgcaaatattccaccat |
74 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| ||||||||| |
|
|
| T |
36333938 |
aatagtgcgccacatgagaggatccttgcaaatgttccaccat |
36333980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 14934507 - 14934640
Alignment:
| Q |
41 |
ccacatgtgaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggagaatgtttatt |
140 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||| | | |||||||| | | ||||||| |||||||||||| |
|
|
| T |
14934507 |
ccacatgtgaggatccttgaaaatattccaccaaagagggcacacttgacatgcactagccaatatttcaatggcaccaagcctttggagaatgtttgca |
14934606 |
T |
|
| Q |
141 |
gccaaatcttttggtagttcaagccaatttggct |
174 |
Q |
| |
|
| || |||| |||| ||||||||||||||||||| |
|
|
| T |
14934607 |
gtcacatctcttggaagttcaagccaatttggct |
14934640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 5569437 - 5569512
Alignment:
| Q |
49 |
gaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcct |
124 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||||||||| ||||||| || | ||||||||||||||||| |
|
|
| T |
5569437 |
gaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgttactacatcaatagtatcaagcct |
5569512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 5574415 - 5574490
Alignment:
| Q |
49 |
gaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcct |
124 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||||||||| ||||||| || | ||||||||||||||||| |
|
|
| T |
5574415 |
gaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgttactacatcaatagtatcaagcct |
5574490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 25784287 - 25784418
Alignment:
| Q |
41 |
ccacatgtgaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggagaatgtttatt |
140 |
Q |
| |
|
||||||| |||||| || || ||||||||||||| |||||||||||||||||||||||| || | || | |||| |||||| ||| |||||| || |
|
|
| T |
25784287 |
ccacatgaaaggatctttacatatattccaccatagagggcacacttgacatacacttgtaactacgtcgaaggtattaagccttcggaaaatgttggtt |
25784386 |
T |
|
| Q |
141 |
gccaaatcttttggtagttcaagccaatttgg |
172 |
Q |
| |
|
| || |||| |||| ||||||||||||||||| |
|
|
| T |
25784387 |
gtcacatctcttggaagttcaagccaatttgg |
25784418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 172
Target Start/End: Original strand, 16053597 - 16053719
Alignment:
| Q |
50 |
aggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggagaatgtttattgccaaatct |
149 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||||| ||| ||||||| | |||||||| | | |||||||||| || || ||| || ||||||| |
|
|
| T |
16053597 |
aggatccttgcaaatgttccaccaaagagggcacactccgcatgcacttgttaaaatttcaaatgcaccaagcctctgaaggatatttgatgtcaaatct |
16053696 |
T |
|
| Q |
150 |
tttggtagttcaagccaatttgg |
172 |
Q |
| |
|
| || || |||||||||||||| |
|
|
| T |
16053697 |
ctaggaagatcaagccaatttgg |
16053719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 137
Target Start/End: Original strand, 16644741 - 16644842
Alignment:
| Q |
36 |
gtgcaccacatgtgaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggagaatgt |
135 |
Q |
| |
|
|||| ||||||| |||| ||||||||||| |||||||||| || |||||| | || ||||||| |||||||||| | || |||||| || ||||||| |
|
|
| T |
16644741 |
gtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacactagggatgcacttgtcacaatttcaactgcattaagcctttgaagaatgt |
16644840 |
T |
|
| Q |
136 |
tt |
137 |
Q |
| |
|
|| |
|
|
| T |
16644841 |
tt |
16644842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 137
Target Start/End: Original strand, 17619102 - 17619203
Alignment:
| Q |
36 |
gtgcaccacatgtgaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggagaatgt |
135 |
Q |
| |
|
|||| ||||||| |||| ||||||||||| |||||||||| || |||||| | || ||||||| |||||||||| | || |||||| || ||||||| |
|
|
| T |
17619102 |
gtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacactagggatgcacttgtcacaatttcaactgcattaagcctttgaagaatgt |
17619201 |
T |
|
| Q |
136 |
tt |
137 |
Q |
| |
|
|| |
|
|
| T |
17619202 |
tt |
17619203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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