View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16635_low_25 (Length: 231)
Name: NF16635_low_25
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16635_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 30048837 - 30049038
Alignment:
| Q |
17 |
aaggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048837 |
aaggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggt |
30048936 |
T |
|
| Q |
117 |
tcatgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048937 |
tcatgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtga |
30049036 |
T |
|
| Q |
217 |
tg |
218 |
Q |
| |
|
|| |
|
|
| T |
30049037 |
tg |
30049038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 7161194 - 7161395
Alignment:
| Q |
17 |
aaggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| |
|
|
| T |
7161194 |
aaggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagactagatttgatgttctctactagtttgctttcaaggt |
7161293 |
T |
|
| Q |
117 |
tcatgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161294 |
tcatgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtga |
7161393 |
T |
|
| Q |
217 |
tg |
218 |
Q |
| |
|
|| |
|
|
| T |
7161394 |
tg |
7161395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 197178 - 196977
Alignment:
| Q |
17 |
aaggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
197178 |
aaggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggt |
197079 |
T |
|
| Q |
117 |
tcatgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
197078 |
tcatgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtga |
196979 |
T |
|
| Q |
217 |
tg |
218 |
Q |
| |
|
|| |
|
|
| T |
196978 |
tg |
196977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 3945091 - 3945291
Alignment:
| Q |
17 |
aaggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945091 |
aaggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggt |
3945190 |
T |
|
| Q |
117 |
tcatgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945191 |
tcatgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtga |
3945290 |
T |
|
| Q |
217 |
t |
217 |
Q |
| |
|
| |
|
|
| T |
3945291 |
t |
3945291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 39950339 - 39950138
Alignment:
| Q |
17 |
aaggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950339 |
aaggcagatgttactcaatataggagtttgataggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggt |
39950240 |
T |
|
| Q |
117 |
tcatgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950239 |
tcatgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtga |
39950140 |
T |
|
| Q |
217 |
tg |
218 |
Q |
| |
|
|| |
|
|
| T |
39950139 |
tg |
39950138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 22364719 - 22364920
Alignment:
| Q |
17 |
aaggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22364719 |
aaggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttcaaggt |
22364818 |
T |
|
| Q |
117 |
tcatgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364819 |
tcatgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtga |
22364918 |
T |
|
| Q |
217 |
tg |
218 |
Q |
| |
|
|| |
|
|
| T |
22364919 |
tg |
22364920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 22134777 - 22134833
Alignment:
| Q |
77 |
agaccagatttgatgttctctgctagtttgctttctaggttcatgcattcaccaagt |
133 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||| ||||| ||||| || |||||| |
|
|
| T |
22134777 |
agaccagatttgatgttttctacaagtttgctttcaaggtttatgcaatctccaagt |
22134833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 17387577 - 17387521
Alignment:
| Q |
77 |
agaccagatttgatgttctctgctagtttgctttctaggttcatgcattcaccaagt |
133 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||| ||||| ||||| || |||||| |
|
|
| T |
17387577 |
agaccagatttgatgttttctacaagtttgctttcaaggtttatgcaatctccaagt |
17387521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University