View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16635_low_3 (Length: 455)
Name: NF16635_low_3
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16635_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 455
Target Start/End: Complemental strand, 38301699 - 38301265
Alignment:
| Q |
16 |
ataggtgagttagtatatgatatttagttttatgtaaaattattgactttgttttaatagtggtaatggatcttccattgaatgcaactgtttataattt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38301699 |
ataggtgagttagtatatgatatttagttttatgtaaaattattgactttgttttaatagtggtaatggatcttccattgaatgcaactgtttataatt- |
38301601 |
T |
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| Q |
116 |
acctagggtatggactattcttaacagctttctgtccatattttctccatctgtatccatcttctagctgatcaacttcactctttgtcatgaaagcaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38301600 |
acctagggtatggactattcttaacagctttctgtccatattttctccatctgtatccatcttctagctgatcaacttcactctttgtcatgaaagcaaa |
38301501 |
T |
|
| Q |
216 |
ccttggttctttctgcttcttctctcctttcttcttatccaccttgttgttcctttatttcattcaaaaacatatattaagtaataatattaataactac |
315 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38301500 |
ccttggttctttttgcttcttctctcctttcttcttatccaccttgttgttcctttatttcattcaaaaacatatattaagtaataatattaataactac |
38301401 |
T |
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| Q |
316 |
atgttgcaccattaaattaattcaagggtttgatgagataagaaaaggaagaaaagatttacccatttttagagctttcttgtcctggttcttctttaac |
415 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38301400 |
atgttgcaccatta----aattcaagggtttgatgagataagaaaaggaagaaaagatttacccatttttagagctttcttgtcctggttcttctttaac |
38301305 |
T |
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| Q |
416 |
ctgtccaatatttttctttctctttcctgaatcttcttct |
455 |
Q |
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| T |
38301304 |
ctgtccaatatttttctttctctttcctgaatcttcttct |
38301265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 19275417 - 19275310
Alignment:
| Q |
116 |
acctagggtatggactattcttaacagctttctgtccatattttctccatctgtatccatcttctagctgatcaacttcactctttgtcatgaaagcaaa |
215 |
Q |
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|||||||| |||||||||| ||||| || ||||| ||||| || ||||||||||| |||||||| || ||||||||||||||||| ||||| || ||||| |
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| T |
19275417 |
acctagggaatggactatttttaactgccttctgaccatacttcctccatctgtacccatcttcaagatgatcaacttcactcttggtcataaatgcaaa |
19275318 |
T |
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| Q |
216 |
ccttggtt |
223 |
Q |
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|||||||| |
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| T |
19275317 |
ccttggtt |
19275310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 39835139 - 39835250
Alignment:
| Q |
116 |
acctagggtatggactattcttaacagctttctgtccatattttctccatctgtatccatcttctagctgatcaacttcactctttgtcatgaaagcaaa |
215 |
Q |
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|||| ||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||| || ||||||| ||||| || |||| ||| ||||| |
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| T |
39835139 |
accttgggtacggactattcttgactgctttctgtccatattttctccatctatatccatcttcaaggtgatcaatctcacttttagtcaagaatgcaaa |
39835238 |
T |
|
| Q |
216 |
ccttggttcttt |
227 |
Q |
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|||||| ||||| |
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| T |
39835239 |
ccttggctcttt |
39835250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 12557730 - 12557644
Alignment:
| Q |
139 |
acagctttctgtccatattttctccatctgtatccatcttctagctgatcaacttcactctttgtcatgaaagcaaaccttggttct |
225 |
Q |
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| T |
12557730 |
acagctttttggccatatttacgccacctataaccatcatctaggtgatcaacttcactctttgtcatgaaagcaaatctgggttct |
12557644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 31614645 - 31614686
Alignment:
| Q |
135 |
cttaacagctttctgtccatattttctccatctgtatccatc |
176 |
Q |
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| T |
31614645 |
cttaacaactttctgtccatatttcctccatctgtaaccatc |
31614686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 12869143 - 12869229
Alignment:
| Q |
139 |
acagctttctgtccatattttctccatctgtatccatcttctagctgatcaacttcactctttgtcatgaaagcaaaccttggttct |
225 |
Q |
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| T |
12869143 |
acagctttttggccatatttacgccacctatagccatcatctaggtgatcaacttcactctttgtcatgaaagcaaacctgggttct |
12869229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 38850201 - 38850301
Alignment:
| Q |
130 |
ctattcttaacagctttctgtccatattttctccatctgtatccatcttctagctgatcaacttcactctttgtcatgaaagcaaaccttggttctttct |
229 |
Q |
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||||| || |||||||| || || || |||||||||| |||||||||||| || |||||||| || || || |||||||||||||| ||||||||| ||| |
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| T |
38850201 |
ctatttttgacagctttttgaccgtactttctccatcggtatccatcttccagatgatcaacctcgcttttcgtcatgaaagcaaatcttggttctctct |
38850300 |
T |
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| Q |
230 |
g |
230 |
Q |
| |
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| T |
38850301 |
g |
38850301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 43387090 - 43387156
Alignment:
| Q |
110 |
taatttacctagggtatggactattcttaacagctttctgtccatattttctccatctgtatccatc |
176 |
Q |
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|||||||||| ||||||||||||||||| |||| |||| |||||| || |||||| |||||||||| |
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| T |
43387090 |
taatttaccttgggtatggactattcttgacagacttctttccatacttcctccatttgtatccatc |
43387156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 44974443 - 44974361
Alignment:
| Q |
130 |
ctattcttaacagctttctgtccatattttctccatctgtatccatcttctagctgatcaacttcactctttgtcatgaaagc |
212 |
Q |
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||||| ||||||||||| || || || |||||||||||||| |||||||| || ||||| || || || || ||||||||||| |
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| T |
44974443 |
ctatttttaacagctttttgaccgtactttctccatctgtacccatcttccagatgatccacctcgcttttcgtcatgaaagc |
44974361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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