View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16635_low_9 (Length: 394)
Name: NF16635_low_9
Description: NF16635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16635_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 36239170 - 36238938
Alignment:
| Q |
18 |
ggtatcaatcatctctcaattgacaagtctttcagaataaagcaagatgataaattcttcttaaggctaaaatcaaaggaagcttctagtgccaacactt |
117 |
Q |
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| T |
36239170 |
ggtatcaatcatctctcaattgacaagtctttcagaataaagcaagatgataaattcttcttaaggctaaaatcaaaggaagcttctagtgccaacgctt |
36239071 |
T |
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| Q |
118 |
catcaagggtcatgtattatggagaaacatcaattgcaattccctttgtatgggaggcacaacctggtactcctaagcaccctttatctgaaacctctat |
217 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36239070 |
catcaagggtcatgtattatggagaaagatcagttgcaattccctttgtatgggaggcacaacctggtactcctaagcaccctttatctgaaacctctat |
36238971 |
T |
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| Q |
218 |
tcctccacttacacccccaccttcatattattc |
250 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
36238970 |
tcctccacttacacccccaccttcatattattc |
36238938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 290 - 386
Target Start/End: Complemental strand, 36238898 - 36238802
Alignment:
| Q |
290 |
caatattttttcatgcattttgtcaaggttggtaggttcaaggaagactactcatgcatcatcgacatcgtctgggtcgtcatcatcggcttcatct |
386 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36238898 |
caatattttttcatgcattttgttaaggttggtaggttcaaggaagactactcatgcatcatcgacatcgtctgggtcgtcatcatcggcttcatct |
36238802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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