View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16636_low_1 (Length: 894)

Name: NF16636_low_1
Description: NF16636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16636_low_1
NF16636_low_1
[»] chr4 (1 HSPs)
chr4 (9-873)||(51390463-51391328)


Alignment Details
Target: chr4 (Bit Score: 822; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 822; E-Value: 0
Query Start/End: Original strand, 9 - 873
Target Start/End: Complemental strand, 51391328 - 51390463
Alignment:
Q  9 gagtgagatgaaacccaaaatccttcttcatcgtcatacccttcttctccaaacccagaacccagcaacacctaagataagacaccaacaactatattgt 108  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51391328 gagtgagatgaaacccaaaatccttcttcatcatcataccctttttctccaaacccagaacccagcaacacctaagataagacaccaacaactatattgt 51391229  T
Q  109 tcaaataaccgtatttgaagtaagcagttcaaaacaaatcaatccaagacatccccccattccattacatatttacggtcaaggttacatctgaacaagc 208  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51391228 tcaaataaccgtatttgaagtaagcaattcaaaacaaatcaatccaagacatccccccattccattacatatttacagtcaaggttacatctgaacaagc 51391129  T
Q  209 actctacatgtatgcttggggattcgaacatcacgatgaatcagaagctacacattagagctactgaaaattacgtcggggtagctcaagattcacagca 308  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  51391128 actctacatgtatgcttggggattcgaacatcactatgaatcagaagctacacattagagctactgaaaattacgtcggggtagctcaagattcacagta 51391029  T
Q  309 gcagttgtcaactgctcaatcgcaacaaaatttcagataaaatttaacaaacgacaatattaatacaa-cattttaacgaaaatcaatgtggaaacaaat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51391028 gcagttgtcaactgctcaatcgcaacaaaatttcagataaaatttgacaaacgacaatattaatacaaacattttaacgaaaatcaatgtggaaacaaat 51390929  T
Q  408 gctaaaccaatcttgcaagaaaagcttccactgttctatgtaccaagaaaaaatgtaatgtaaatgtaactcgctaaattgatgtaataattcgttgcag 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51390928 gctaaaccaatcttgcaagaaaagcttccactgttctatgtaccaagaaaaaatgtaatgtaaatgtaactcgctaaattgatgtaataattcgttgcag 51390829  T
Q  508 tatcatcagctctagttacacaacaaacttatatccatctaaaataaaaacaagtctaatatccaatagaatgaactaaatttctacatccaattgcatt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51390828 tatcatcagctctagttacacaacaaacttatatccatctaaaataaaaacaagtctaatatccaatagaatgaactaaatttctacatccaattgcatt 51390729  T
Q  608 atttgttaatatttcatttctactatcatcatgattacatttcatcacctaccaaacctttcaattctcctgcgacgcaattcatccaaagaaagaccat 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51390728 atttgttaatatttcatttctactatcatcatgattacatttcatcacctaccaaacctttcaattctcctgcgacgcaattcatccaaagaaagaccat 51390629  T
Q  708 cagaatcataataatcacggcggttcatttcatcagaagaaccaccaccaccaactctactagtaccacacatctcacacacattcatcaaaccagaatt 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51390628 cagaatcataataatcacggcggttcatttcatcagaagaaccaccaccaccaaccctactagtaccacacatctcacacacattcatcaaaccagaatt 51390529  T
Q  808 atcataagtacaagcctgacatctccaatcagcagcaacccgggcagcattcctccccgtacggcc 873  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51390528 atcataagtacaagcctgacatctccaatcagcagcaacctgggcagcattcctccccgtacggcc 51390463  T

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